Resource
| Id | DNase-seq/ENCSR988YKR |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR988YKR [biosample_summary="Homo sapiens kidney capillary endothelial cell female embryo (113 days)"] |
| Description |
status: released biological_replicates: Rep 1 summary: female embryo (113 days) output_type: peaks audit_internal_action: Released analysis {ENCAN868VKA|/analyses/ENCAN868VKA/} has in progress subobject document {9395f665-bbd3-44b6-adf9-ac794f6f6b20|/documents/9395f665-bbd3-44b6-adf9-ac794f6f6b20/} audit_internal_action: Released analysis {ENCAN868VKA|/analyses/ENCAN868VKA/} has in progress subobject document {d6330389-d6ea-4031-84e4-47ed3b69b728|/documents/d6330389-d6ea-4031-84e4-47ed3b69b728/} audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF033OTC|/files/ENCFF033OTC/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.25. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR988YKR | float |
DNase-seq_ENCSR988YKR |
DNase-seq ENCSR988YKR [biosample_summary="Homo sapiens kidney capillary endothelial cell female embryo (113 days)"]
|
 |
[0.0582, 4.94] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 23854989 | 0.74% | 111739 |
| chr1 | 2179319 | 0.88% | 10146 |
| chr2 | 1868083 | 0.77% | 8807 |
| chr3 | 1593949 | 0.80% | 7406 |
| chr4 | 1209862 | 0.64% | 5747 |
| chr5 | 1361007 | 0.75% | 6320 |
| chr6 | 1466092 | 0.86% | 6758 |
| chr7 | 1193666 | 0.75% | 5654 |
| chr8 | 1113685 | 0.77% | 5208 |
| chr9 | 995352 | 0.72% | 4689 |
| chr10 | 1197694 | 0.90% | 5603 |
| chr11 | 1198806 | 0.89% | 5612 |
| chr12 | 1200307 | 0.90% | 5565 |
| chr13 | 647677 | 0.57% | 3016 |
| chr14 | 772855 | 0.72% | 3594 |
| chr15 | 805581 | 0.79% | 3782 |
| chr16 | 753156 | 0.83% | 3558 |
| chr17 | 989569 | 1.19% | 4624 |
| chr18 | 553740 | 0.69% | 2617 |
| chr19 | 830096 | 1.42% | 3796 |
| chr20 | 627062 | 0.97% | 2968 |
| chr21 | 274004 | 0.59% | 1274 |
| chr22 | 425968 | 0.84% | 2024 |
| chrX | 597025 | 0.38% | 2968 |
| chrY | 434 | <0.01% | 3 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 111739 | 2 | 1000 | 213.49 | 200 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF382ZAU.bed.gz | 1.15 MB | 30771eeba3943b831c19f9e9a7844daf |
| ENCFF382ZAU.tabix.bed.gz | 1.06 MB | c3924ed57537c2b7104247f6de832f7b |
| ENCFF382ZAU.tabix.bed.gz.tbi | 460.12 KB | 503be0b2064746ad2aaab8fc3ecb0359 |
| genomic_resource.yaml | 2.52 KB | 11978d58b058868a7cc81d36ed973c6e |
| statistics/ |