Resource

Id DNase-seq/ENCSR987GUScontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR987GUS [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-15 for 24 hours"]
Description
Labels
  • accession: ENCSR987GUS
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000663/
  • biosample_summary: Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-15 for 24 hours
  • date_created: 2020-04-19T18:36:52.674549+00:00
  • date_released: 2020-10-06
  • doi: 10.17989/ENCSR987GUS
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-15 for 24 hours
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR987GUS float

DNase-seq_ENCSR987GUS
DNase-seq ENCSR987GUS [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 24 hours, 100 ng/mL Interleukin-15 for 24 hours"]
 HISTOGRAM FOR DNase-seq_ENCSR987GUS [0.0469, 57.4]
n
19,633,129
mean
4.01
sd
6.09

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 196331290.61% 104906
chr1 1929833 0.78% 10248
chr2 1430402 0.59% 7692
chr3 1086383 0.55% 5836
chr4 733044 0.39% 3932
chr5 915756 0.50% 4920
chr6 1155289 0.68% 6149
chr7 907478 0.57% 4911
chr8 792612 0.55% 4296
chr9 814200 0.59% 4338
chr10 919440 0.69% 4941
chr11 979339 0.72% 5223
chr12 970691 0.73% 5174
chr13 405398 0.35% 2208
chr14 669733 0.63% 3622
chr15 648483 0.64% 3480
chr16 784460 0.87% 4152
chr17 1128468 1.36% 5855
chr18 346933 0.43% 1900
chr19 1092713 1.86% 5651
chr20 577857 0.90% 3135
chr21 251008 0.54% 1342
chr22 467663 0.92% 2491
chrX 599481 0.38% 3265
chrY 26465 0.05% 145
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 104906 2 860 187.15 180
global segment-length histogram

Files

Filename Size md5
ENCFF059JYO.bed.gz 1.14 MB 93561a5f71992461ec299e6e1c3755e6
ENCFF059JYO.tabix.bed.gz 1.05 MB 97c26c114340ad5ea513541852e4886e
ENCFF059JYO.tabix.bed.gz.tbi 372.9 KB 8b292ced8af9dc2536c5160254699ae1
genomic_resource.yaml 1.83 KB 07ff12e61b30888eb1d9ba2e202c5225
statistics/