Resource
| Id | DNase-seq/ENCSR986YWZ |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR986YWZ [biosample_summary="Homo sapiens inferior parietal cortex tissue male adult (84 years)"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (84 years) output_type: peaks audit_error: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF948ZIC|/files/ENCFF948ZIC/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.20. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) audit_internal_action: Released analysis {ENCAN941SWU|/analyses/ENCAN941SWU/} has in progress subobject document {158478b6-7d93-4407-8ad6-fa794f3c348d|/documents/158478b6-7d93-4407-8ad6-fa794f3c348d/} |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR986YWZ | float |
DNase-seq_ENCSR986YWZ |
DNase-seq ENCSR986YWZ [biosample_summary="Homo sapiens inferior parietal cortex tissue male adult (84 years)"]
|
 |
[0.0337, 6.37] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 20841301 | 0.65% | 96140 |
| chr1 | 1932349 | 0.78% | 8884 |
| chr2 | 1669037 | 0.69% | 7671 |
| chr3 | 1415749 | 0.71% | 6448 |
| chr4 | 1042035 | 0.55% | 4770 |
| chr5 | 1234611 | 0.68% | 5592 |
| chr6 | 1337155 | 0.78% | 5982 |
| chr7 | 1054253 | 0.66% | 4910 |
| chr8 | 994349 | 0.69% | 4563 |
| chr9 | 851910 | 0.62% | 3966 |
| chr10 | 967025 | 0.72% | 4453 |
| chr11 | 1041394 | 0.77% | 4858 |
| chr12 | 1015517 | 0.76% | 4644 |
| chr13 | 563702 | 0.49% | 2560 |
| chr14 | 708941 | 0.66% | 3213 |
| chr15 | 660277 | 0.65% | 3054 |
| chr16 | 632442 | 0.70% | 3031 |
| chr17 | 837461 | 1.01% | 3909 |
| chr18 | 459046 | 0.57% | 2114 |
| chr19 | 742886 | 1.27% | 3465 |
| chr20 | 506777 | 0.79% | 2418 |
| chr21 | 250073 | 0.54% | 1153 |
| chr22 | 357878 | 0.70% | 1701 |
| chrX | 540033 | 0.35% | 2668 |
| chrY | 26401 | 0.05% | 113 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 96140 | 1 | 1480 | 216.78 | 200 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF786TMD.bed.gz | 1.01 MB | 5ec617958b649300f9d62f583df1bafe |
| ENCFF786TMD.tabix.bed.gz | 958.49 KB | e42a75d967f49437f816b645a87472fa |
| ENCFF786TMD.tabix.bed.gz.tbi | 420.27 KB | 3b649950056d942614a56f28a90868f4 |
| genomic_resource.yaml | 2.28 KB | c362cc119774f8afeb58066727606151 |
| statistics/ |