Resource

Id DNase-seq/ENCSR984HJWcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR984HJW [biosample_summary="Homo sapiens with Cognitive impairment, Alzheimer''s disease; head of caudate nucleus tissue female adult (90 or above years)"]
Description
Labels
  • accession: ENCSR984HJW
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002626/
  • biosample_summary: Homo sapiens with Cognitive impairment, Alzheimer's disease; head of caudate nucleus tissue female adult (90 or above years)
  • date_created: 2020-12-15T22:21:54.041253+00:00
  • date_released: 2021-01-11
  • doi: 10.17989/ENCSR984HJW
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (90 or above years) with Cognitive impairment, Alzheimer's disease
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR984HJW float

DNase-seq_ENCSR984HJW
DNase-seq ENCSR984HJW [biosample_summary="Homo sapiens with Cognitive impairment, Alzheimer''s disease; head of caudate nucleus tissue female adult (90 or above years)"]
 HISTOGRAM FOR DNase-seq_ENCSR984HJW [0.0752, 26.5]
n
12,123,071
mean
2.93
sd
3.13

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 121230710.38% 64286
chr1 1143835 0.46% 6021
chr2 885976 0.37% 4738
chr3 687684 0.35% 3609
chr4 475696 0.25% 2470
chr5 593490 0.33% 3229
chr6 609535 0.36% 3238
chr7 561467 0.35% 3002
chr8 518292 0.36% 2803
chr9 544609 0.39% 2914
chr10 616713 0.46% 3281
chr11 676863 0.50% 3606
chr12 589573 0.44% 3077
chr13 240959 0.21% 1283
chr14 392037 0.37% 2057
chr15 386391 0.38% 2052
chr16 485218 0.54% 2576
chr17 666344 0.80% 3530
chr18 223943 0.28% 1206
chr19 694419 1.18% 3557
chr20 364286 0.57% 1969
chr21 144904 0.31% 780
chr22 319268 0.63% 1676
chrX 301219 0.19% 1609
chrY 350 <0.01% 3
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 64286 1 980 188.58 180
global segment-length histogram

Files

Filename Size md5
ENCFF165QRQ.bed.gz 707.96 KB cef400d6e6560ae26fcd350763ef1258
ENCFF165QRQ.tabix.bed.gz 649.53 KB 21b3ccb0f78acb9fb585809bcfaf14f4
ENCFF165QRQ.tabix.bed.gz.tbi 275.7 KB db3eeeab45f8595893517d0904fe53fe
genomic_resource.yaml 1.56 KB 8c34ab6ab1b22c0ce5a0990d8a23c006
statistics/