Resource

Id DNase-seq/ENCSR978QUTcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR978QUT [biosample_summary="Homo sapiens testis tissue male adult (54 years)"]
Description
Labels
  • accession: ENCSR978QUT
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0000473/
  • biosample_summary: Homo sapiens testis tissue male adult (54 years)
  • date_created: 2016-12-27T20:17:37.695865+00:00
  • date_released: 2017-11-01
  • doi: 10.17989/ENCSR978QUT
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (54 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR978QUT float

DNase-seq_ENCSR978QUT

DNase-seq ENCSR978QUT [biosample_summary="Homo sapiens testis tissue male adult (54 years)"]
HISTOGRAM FOR DNase-seq_ENCSR978QUT [5, 5.38e+03]
n
25,577,186
mean
39.5
sd
43.4

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 255771860.79% 169591
chr1 2252391 0.90% 14937
chr2 2771251 1.14% 18375
chr3 1452846 0.73% 9635
chr4 807721 0.42% 5361
chr5 1315333 0.72% 8716
chr6 1217918 0.71% 8088
chr7 1376268 0.86% 9127
chr8 1182146 0.81% 7820
chr9 1130703 0.82% 7503
chr10 1892476 1.41% 12552
chr11 1319601 0.98% 8748
chr12 911175 0.68% 6029
chr13 660044 0.58% 4379
chr14 791179 0.74% 5239
chr15 1034632 1.01% 6873
chr16 896570 0.99% 5966
chr17 798113 0.96% 5272
chr18 729676 0.91% 4831
chr19 733738 1.25% 4865
chr20 947344 1.47% 6285
chr21 444859 0.95% 2950
chr22 640961 1.26% 4254
chrX 225149 0.14% 1487
chrY 45092 0.08% 299
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 169591 2 546 150.82 150
global segment-length histogram

Files

Filename Size md5
ENCFF833PXP.bed.gz 1.49 MB c905c4c05d4af323f34bddc6b345fb9b
ENCFF833PXP.tabix.bed.gz 1.28 MB 952470010f3ce71e841a21cef3afd677
ENCFF833PXP.tabix.bed.gz.tbi 235.74 KB 215f416eb1e00ba93174af802a585253
genomic_resource.yaml 1.37 KB 4636bd81caa8c5aa8834f45099e3aa43
statistics/