Resource

Id DNase-seq/ENCSR977UMUcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR977UMU [biosample_summary="Homo sapiens with multiple sclerosis; CD4-positive, alpha-beta memory T cell"]
Description
Labels
  • accession: ENCSR977UMU
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000897/
  • biosample_summary: Homo sapiens with multiple sclerosis; CD4-positive, alpha-beta memory T cell
  • date_created: 2022-02-07T22:20:21.469108+00:00
  • date_released: 2022-02-25
  • doi: 10.17989/ENCSR977UMU
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: with multiple sclerosis
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR977UMU float

DNase-seq_ENCSR977UMU
DNase-seq ENCSR977UMU [biosample_summary="Homo sapiens with multiple sclerosis; CD4-positive, alpha-beta memory T cell"]
 HISTOGRAM FOR DNase-seq_ENCSR977UMU [0.043, 77.8]
n
15,376,498
mean
5.05
sd
8.72

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 153764980.48% 78066
chr1 1527796 0.61% 7756
chr2 1132941 0.47% 5736
chr3 887427 0.45% 4510
chr4 583916 0.31% 2987
chr5 736730 0.41% 3744
chr6 955602 0.56% 4779
chr7 733197 0.46% 3719
chr8 615986 0.42% 3153
chr9 611461 0.44% 3103
chr10 725586 0.54% 3710
chr11 770421 0.57% 3938
chr12 774344 0.58% 3956
chr13 354839 0.31% 1772
chr14 551198 0.51% 2761
chr15 492443 0.48% 2535
chr16 561619 0.62% 2846
chr17 835384 1.00% 4227
chr18 271255 0.34% 1378
chr19 810348 1.38% 4032
chr20 409049 0.63% 2121
chr21 177965 0.38% 903
chr22 333213 0.66% 1722
chrX 523778 0.34% 2678
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 78066 2 1080 196.97 180
global segment-length histogram

Files

Filename Size md5
ENCFF083WON.bed.gz 870.2 KB df5319172d2b9d2e451af0e7b575f645
ENCFF083WON.tabix.bed.gz 800.31 KB 3f150c60c65f4344878f1ca884f24f86
ENCFF083WON.tabix.bed.gz.tbi 316.57 KB facf10cfb3e063e67c66aaaef3a8a70c
genomic_resource.yaml 1.29 KB c9140d8c7802e226a09ab84d500beaba
statistics/