Resource

Id DNase-seq/ENCSR965JHWcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR965JHW [biosample_summary="Homo sapiens T-cell male adult (25 years)"]
Description
Labels
  • accession: ENCSR965JHW
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000084/
  • biosample_summary: Homo sapiens T-cell male adult (25 years)
  • date_created: 2020-04-12T19:00:06.096316+00:00
  • date_released: 2020-10-02
  • doi: 10.17989/ENCSR965JHW
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (25 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR965JHW float

DNase-seq_ENCSR965JHW

DNase-seq ENCSR965JHW [biosample_summary="Homo sapiens T-cell male adult (25 years)"]
HISTOGRAM FOR DNase-seq_ENCSR965JHW [0.161, 76.5]
n
9,948,776
mean
6.76
sd
9.32

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 99487760.31% 52554
chr1 996719 0.40% 5264
chr2 700282 0.29% 3727
chr3 541658 0.27% 2847
chr4 349588 0.18% 1831
chr5 443656 0.24% 2350
chr6 586172 0.34% 3084
chr7 462081 0.29% 2479
chr8 360177 0.25% 1933
chr9 402347 0.29% 2139
chr10 445568 0.33% 2345
chr11 511833 0.38% 2713
chr12 495462 0.37% 2611
chr13 206646 0.18% 1080
chr14 345707 0.32% 1839
chr15 316587 0.31% 1708
chr16 407262 0.45% 2168
chr17 604055 0.73% 3135
chr18 158729 0.20% 860
chr19 650353 1.11% 3299
chr20 281619 0.44% 1512
chr21 126093 0.27% 670
chr22 243450 0.48% 1293
chrX 300824 0.19% 1601
chrY 11908 0.02% 66
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 52554 5 800 189.31 180
global segment-length histogram

Files

Filename Size md5
ENCFF488EGS.bed.gz 587.24 KB 4afab09be3b58c682d912fe527b0b87e
ENCFF488EGS.tabix.bed.gz 534.6 KB e07f0838ade046a6e729958e316fa753
ENCFF488EGS.tabix.bed.gz.tbi 249.22 KB d3b2b5b51d819b9ac75081f78da985e9
genomic_resource.yaml 1.18 KB a5909b1e9b0eacac001a99aeae7c9dee
statistics/