Resource

Id DNase-seq/ENCSR964VVWcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR964VVW [biosample_summary="Homo sapiens right lung tissue male embryo (96 days)"]
Description
Labels
  • accession: ENCSR964VVW
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002167/
  • biosample_summary: Homo sapiens right lung tissue male embryo (96 days)
  • date_created: 2015-09-16T21:42:52.378378+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR964VVW
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male embryo (96 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR964VVW float

DNase-seq_ENCSR964VVW
DNase-seq ENCSR964VVW [biosample_summary="Homo sapiens right lung tissue male embryo (96 days)"]
 HISTOGRAM FOR DNase-seq_ENCSR964VVW [3, 1.89e+03]
n
15,324,500
mean
49.4
sd
43.8

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 153245000.48% 101665
chr1 1359991 0.55% 9029
chr2 1296299 0.54% 8600
chr3 1042691 0.53% 6917
chr4 846333 0.44% 5612
chr5 927650 0.51% 6148
chr6 967591 0.57% 6418
chr7 798415 0.50% 5290
chr8 722785 0.50% 4793
chr9 637201 0.46% 4230
chr10 775434 0.58% 5149
chr11 755144 0.56% 5013
chr12 744268 0.56% 4939
chr13 462841 0.40% 3061
chr14 463180 0.43% 3076
chr15 481624 0.47% 3194
chr16 436366 0.48% 2897
chr17 566771 0.68% 3766
chr18 360161 0.45% 2386
chr19 456853 0.78% 3036
chr20 374436 0.58% 2487
chr21 176862 0.38% 1176
chr22 226650 0.45% 1503
chrX 421254 0.27% 2787
chrY 23700 0.04% 158
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 101665 14 450 150.74 150
global segment-length histogram

Files

Filename Size md5
ENCFF046QJY.bed.gz 980.61 KB 735f4f3e53fb0bcd5a6e6d42072f667d
ENCFF046QJY.tabix.bed.gz 842.77 KB 4373e1e4b8588fccff6f9f66856ea784
ENCFF046QJY.tabix.bed.gz.tbi 461.16 KB a7f0e142e394a9d6e33d8fa130d405a3
genomic_resource.yaml 1.39 KB 4ed86832c1a270311181ddbd12ca6a34
statistics/