Resource

Id DNase-seq/ENCSR963ALVcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR963ALV [biosample_summary="Homo sapiens neural progenitor cell originated from H9"]
Description
Labels
  • accession: ENCSR963ALV
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/in_vitro_differentiated_cells_CL_0011020/
  • biosample_summary: Homo sapiens neural progenitor cell originated from H9
  • date_created: 2015-06-29T19:47:03.121746+00:00
  • date_released: 2016-06-14
  • doi: 10.17989/ENCSR963ALV
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary: female embryo (5 days)
  • status: released
  • submitter_comment: This experiment previously contained replicates 3 & 4 (ENCBS946LBI & ENCBS752TEN). Those samples were determined to be mis-annotated. This issue has been rectified and those data are found in ENCSR360XIS and ENCSR101LUA, respectively (as of Aug 23, 2024).

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR963ALV float

DNase-seq_ENCSR963ALV
DNase-seq ENCSR963ALV [biosample_summary="Homo sapiens neural progenitor cell originated from H9"]
 HISTOGRAM FOR DNase-seq_ENCSR963ALV [0.0237, 46.8]
n
34,702,208
mean
1.88
sd
2.83

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 347022081.08% 182743
chr1 3132950 1.26% 16307
chr2 2671448 1.10% 14210
chr3 2098464 1.06% 11270
chr4 1723480 0.91% 9334
chr5 1926663 1.06% 10352
chr6 1989778 1.16% 10640
chr7 1770954 1.11% 9422
chr8 1557245 1.07% 8351
chr9 1520464 1.10% 7951
chr10 1636542 1.22% 8679
chr11 1839929 1.36% 9605
chr12 1684201 1.26% 8829
chr13 908672 0.79% 4904
chr14 1118009 1.04% 5815
chr15 1116755 1.09% 5796
chr16 1218442 1.35% 6299
chr17 1571273 1.89% 7934
chr18 784869 0.98% 4227
chr19 1319360 2.25% 6522
chr20 942070 1.46% 4883
chr21 357525 0.77% 1917
chr22 668325 1.32% 3442
chrX 1142940 0.73% 6040
chrY 1850 <0.01% 14
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 182743 1 800 189.9 180
global segment-length histogram

Files

Filename Size md5
ENCFF502QXW.bed.gz 1.99 MB 5f8d3825b28f4d4fece539762b90ba07
ENCFF502QXW.tabix.bed.gz 1.82 MB 30baaf09b266ee12c92b23fd840346d5
ENCFF502QXW.tabix.bed.gz.tbi 624.83 KB c823db151687588aec4c9e3ded7f3b4c
genomic_resource.yaml 2.31 KB 93428d3a7702c9ce908fa79d2cbad0e5
statistics/