Resource

Id DNase-seq/ENCSR960EVMcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR960EVM [biosample_summary="Homo sapiens stimulated activated CD8-positive, alpha-beta memory T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-4 for 48 hours"]
Description
Labels
  • accession: ENCSR960EVM
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000669/
  • biosample_summary: Homo sapiens stimulated activated CD8-positive, alpha-beta memory T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-4 for 48 hours
  • date_created: 2020-04-19T18:36:48.870586+00:00
  • date_released: 2020-09-28
  • doi: 10.17989/ENCSR960EVM
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-4 for 48 hours
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR960EVM float

DNase-seq_ENCSR960EVM
DNase-seq ENCSR960EVM [biosample_summary="Homo sapiens stimulated activated CD8-positive, alpha-beta memory T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-4 for 48 hours"]
 HISTOGRAM FOR DNase-seq_ENCSR960EVM [0.397, 53.5]
n
8,705,215
mean
5.46
sd
5.31

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 87052150.27% 43907
chr1 872340 0.35% 4400
chr2 624646 0.26% 3178
chr3 485977 0.25% 2465
chr4 299840 0.16% 1501
chr5 392394 0.22% 1987
chr6 524041 0.31% 2613
chr7 397044 0.25% 2011
chr8 322873 0.22% 1654
chr9 356731 0.26% 1824
chr10 384428 0.29% 1971
chr11 434860 0.32% 2209
chr12 452901 0.34% 2269
chr13 169926 0.15% 830
chr14 293640 0.27% 1486
chr15 292624 0.29% 1507
chr16 369490 0.41% 1840
chr17 514912 0.62% 2571
chr18 141478 0.18% 726
chr19 569178 0.97% 2757
chr20 247182 0.38% 1277
chr21 99812 0.21% 512
chr22 206875 0.41% 1040
chrX 252023 0.16% 1279
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 43907 1 796 198.26 200
global segment-length histogram

Files

Filename Size md5
ENCFF559YDV.bed.gz 479.04 KB ab5d4e62f88000ddff87921b19c87179
ENCFF559YDV.tabix.bed.gz 430.94 KB 101a382416e1c7e057598b41fe7895ae
ENCFF559YDV.tabix.bed.gz.tbi 228.57 KB f0165095e6f5d3b45dd3f8508667beb4
genomic_resource.yaml 2.47 KB 2ba5ae44c02d1f0ee63206e87340cc8d
statistics/