Resource

Id DNase-seq/ENCSR959ZXUcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR959ZXU [biosample_summary="Homo sapiens HeLa-S3"]
Description
Labels
  • accession: ENCSR959ZXU
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0002791/
  • biosample_summary: Homo sapiens HeLa-S3
  • date_created: 2014-06-20T22:06:05.960611+00:00
  • date_released: 2015-08-18
  • doi: 10.17989/ENCSR959ZXU
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR959ZXU float

DNase-seq_ENCSR959ZXU
DNase-seq ENCSR959ZXU [biosample_summary="Homo sapiens HeLa-S3"]
 HISTOGRAM FOR DNase-seq_ENCSR959ZXU [1, 149]
n
27,788,060
mean
51.2
sd
31.7

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 277880600.86% 193939
chr1 2680740 1.08% 18755
chr2 2067090 0.85% 14390
chr3 1882880 0.95% 13052
chr4 1304670 0.69% 9008
chr5 1758230 0.97% 12223
chr6 1738320 1.02% 12093
chr7 1419100 0.89% 10046
chr8 1339120 0.92% 9321
chr9 1198720 0.87% 8336
chr10 1248760 0.93% 8761
chr11 1416020 1.05% 9854
chr12 1474570 1.11% 10279
chr13 670540 0.59% 4631
chr14 899780 0.84% 6260
chr15 957490 0.94% 6736
chr16 810880 0.90% 5740
chr17 1096910 1.32% 7750
chr18 678130 0.84% 4692
chr19 845430 1.44% 6044
chr20 681250 1.06% 4705
chr21 341050 0.73% 2363
chr22 382680 0.75% 2670
chrX 892800 0.57% 6206
chrY 2900 0.01% 24
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 193939 10 370 143.28 150
global segment-length histogram

Files

Filename Size md5
ENCFF346KEV.bed.gz 1.67 MB 805dc03a487a3fa376af4665e29a3ea8
ENCFF346KEV.tabix.bed.gz 1.52 MB 61b4508c12483471632b2d1a741a2810
ENCFF346KEV.tabix.bed.gz.tbi 626.89 KB a8c3a570ffceb0b24a202f460691f3f5
genomic_resource.yaml 1.07 KB 50424baee61de53e1632b2f1602bf410
statistics/