Resource

Id DNase-seq/ENCSR955RQGcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR955RQG [biosample_summary="Homo sapiens with Alzheimer''s disease; posterior cingulate gyrus tissue female adult (90 or above years)"]
Description
Labels
  • accession: ENCSR955RQG
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002740/
  • biosample_summary: Homo sapiens with Alzheimer's disease; posterior cingulate gyrus tissue female adult (90 or above years)
  • date_created: 2021-08-23T17:03:31.111998+00:00
  • date_released: 2021-08-31
  • doi: 10.17989/ENCSR955RQG
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (90 or above years) with Alzheimer's disease
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR955RQG float

DNase-seq_ENCSR955RQG
DNase-seq ENCSR955RQG [biosample_summary="Homo sapiens with Alzheimer''s disease; posterior cingulate gyrus tissue female adult (90 or above years)"]
 HISTOGRAM FOR DNase-seq_ENCSR955RQG [0.0419, 22.6]
n
40,555,061
mean
1.05
sd
1.9

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 405550611.26% 224160
chr1 3545370 1.42% 19721
chr2 2781174 1.15% 15526
chr3 1907608 0.96% 10815
chr4 1591839 0.84% 8907
chr5 1686306 0.93% 9564
chr6 1489904 0.87% 8580
chr7 2245442 1.41% 12393
chr8 1629348 1.12% 8889
chr9 1865002 1.35% 10087
chr10 1939607 1.45% 10716
chr11 2371596 1.76% 12871
chr12 1728600 1.30% 9584
chr13 700281 0.61% 4018
chr14 1252250 1.17% 6851
chr15 1224104 1.20% 6918
chr16 2030326 2.25% 11102
chr17 2693626 3.24% 14696
chr18 575392 0.72% 3334
chr19 2315096 3.95% 12353
chr20 1554294 2.41% 8432
chr21 751493 1.61% 4058
chr22 1825848 3.59% 9733
chrX 846650 0.54% 4976
chrY 3905 0.01% 36
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 224160 1 1020 180.92 180
global segment-length histogram

Files

Filename Size md5
ENCFF818CZA.bed.gz 2.24 MB 692203906a359e3320c6af74c7830b7f
ENCFF818CZA.tabix.bed.gz 2.06 MB a5de5ea8206f1399f01c7708c6335d99
ENCFF818CZA.tabix.bed.gz.tbi 428.08 KB 1b6dc618133327db2fe8260a0a1ce27c
genomic_resource.yaml 1.45 KB b18ac694690de57dd829efd0bbbef054
statistics/