Resource

Id DNase-seq/ENCSR954AJKcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR954AJK [biosample_summary="Homo sapiens Peyer''s patch tissue male adult (37 years)"]
Description
Labels
  • accession: ENCSR954AJK
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001211/
  • biosample_summary: Homo sapiens Peyer's patch tissue male adult (37 years)
  • date_created: 2016-12-27T19:58:49.092780+00:00
  • date_released: 2017-10-02
  • doi: 10.17989/ENCSR954AJK
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (37 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR954AJK float

DNase-seq_ENCSR954AJK
DNase-seq ENCSR954AJK [biosample_summary="Homo sapiens Peyer''s patch tissue male adult (37 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR954AJK [4, 1.73e+04]
n
31,277,574
mean
194
sd
365

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 312775740.97% 208007
chr1 2832693 1.14% 18848
chr2 2564869 1.06% 17057
chr3 1728574 0.87% 11493
chr4 1312832 0.69% 8722
chr5 1540882 0.85% 10241
chr6 1452747 0.85% 9664
chr7 1586810 1.00% 10559
chr8 1277928 0.88% 8496
chr9 1488351 1.08% 9897
chr10 1623217 1.21% 10796
chr11 1904223 1.41% 12654
chr12 1293927 0.97% 8609
chr13 684892 0.60% 4552
chr14 1080959 1.01% 7200
chr15 945893 0.93% 6299
chr16 1186946 1.31% 7903
chr17 1713883 2.06% 11389
chr18 564223 0.70% 3754
chr19 1244274 2.12% 8280
chr20 933422 1.45% 6208
chr21 549575 1.18% 3658
chr22 1121128 2.21% 7445
chrX 603176 0.39% 4004
chrY 42150 0.07% 279
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 208007 1 450 150.37 150
global segment-length histogram

Files

Filename Size md5
ENCFF831GIV.bed.gz 1.94 MB 0c27dd0bdb33a25d0434ac2053ff4afc
ENCFF831GIV.tabix.bed.gz 1.67 MB 54b4cf0babd5a7a2db5be9b23f35f715
ENCFF831GIV.tabix.bed.gz.tbi 469.66 KB 4fe7724eca485db651496b48d9b73487
genomic_resource.yaml 1.4 KB 11fd27b46c19e261a886d500ce4a94df
statistics/