Resource

Id DNase-seq/ENCSR953XJUcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR953XJU [biosample_summary="Homo sapiens left kidney tissue female embryo (107 days)"]
Description
Labels
  • accession: ENCSR953XJU
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0004538/
  • biosample_summary: Homo sapiens left kidney tissue female embryo (107 days)
  • date_created: 2015-09-16T21:43:04.571539+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR953XJU
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female embryo (107 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR953XJU float

DNase-seq_ENCSR953XJU
DNase-seq ENCSR953XJU [biosample_summary="Homo sapiens left kidney tissue female embryo (107 days)"]
 HISTOGRAM FOR DNase-seq_ENCSR953XJU [0.289, 14.5]
n
7,948,793
mean
2.99
sd
2.11

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 79487930.25% 39543
chr1 733325 0.29% 3593
chr2 616633 0.25% 3058
chr3 492262 0.25% 2444
chr4 396308 0.21% 1951
chr5 437410 0.24% 2168
chr6 482723 0.28% 2381
chr7 404119 0.25% 2051
chr8 342910 0.24% 1715
chr9 328301 0.24% 1615
chr10 379889 0.28% 1941
chr11 416279 0.31% 2068
chr12 403155 0.30% 1976
chr13 183806 0.16% 944
chr14 277168 0.26% 1354
chr15 274437 0.27% 1377
chr16 258140 0.29% 1328
chr17 345697 0.42% 1707
chr18 160965 0.20% 817
chr19 385727 0.66% 1787
chr20 199361 0.31% 1035
chr21 83059 0.18% 426
chr22 133835 0.26% 706
chrX 213124 0.14% 1100
chrY 160 <0.01% 1
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 39543 2 980 201.02 180
global segment-length histogram

Files

Filename Size md5
ENCFF361ASF.bed.gz 405.41 KB 1c44113e52e6269b8560920d67c61952
ENCFF361ASF.tabix.bed.gz 368.11 KB e850ce28d3101df43edefd8713368ddc
ENCFF361ASF.tabix.bed.gz.tbi 217.84 KB b93553291724c36e0d859d1a0ebab1c1
genomic_resource.yaml 1.84 KB 0e4d28bc99d87a80ed0bed002422996e
statistics/