Resource

Id DNase-seq/ENCSR953UJLcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR953UJL [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-12 subunit alpha for 4 hours, 100 ng/mL Interleukin-12 subunit beta for 4 hours"]
Description
Labels
  • accession: ENCSR953UJL
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000663/
  • biosample_summary: Homo sapiens stimulated activated CD4-positive, alpha-beta T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-12 subunit alpha for 4 hours, 100 ng/mL Interleukin-12 subunit beta for 4 hours
  • date_created: 2020-04-18T22:21:50.339254+00:00
  • date_released: 2020-10-06
  • doi: 10.17989/ENCSR953UJL
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-12 subunit alpha for 4 hours, 100 ng/mL Interleukin-12 subunit beta for 4 hours
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR953UJL float

DNase-seq_ENCSR953UJL
DNase-seq ENCSR953UJL [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-12 subunit alpha for 4 hours, 100 ng/mL Interleukin-12 subunit beta for 4 hours"]
 HISTOGRAM FOR DNase-seq_ENCSR953UJL [0.356, 66.6]
n
6,585,779
mean
7.46
sd
7.03

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 65857790.20% 36231
chr1 665105 0.27% 3627
chr2 460692 0.19% 2557
chr3 358736 0.18% 1965
chr4 231651 0.12% 1257
chr5 287876 0.16% 1594
chr6 377385 0.22% 2077
chr7 298291 0.19% 1656
chr8 238793 0.16% 1327
chr9 262934 0.19% 1448
chr10 291481 0.22% 1592
chr11 337988 0.25% 1873
chr12 344805 0.26% 1904
chr13 136035 0.12% 735
chr14 226514 0.21% 1241
chr15 218473 0.21% 1212
chr16 276331 0.31% 1528
chr17 403848 0.49% 2209
chr18 97784 0.12% 539
chr19 461944 0.79% 2479
chr20 186349 0.29% 1056
chr21 74819 0.16% 421
chr22 158172 0.31% 874
chrX 189773 0.12% 1060
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 36231 7 680 181.77 180
global segment-length histogram

Files

Filename Size md5
ENCFF307OXE.bed.gz 396.61 KB f01921346cca605e9b6f26f317894770
ENCFF307OXE.tabix.bed.gz 359.14 KB affaabb3212fe8d2c394d9143e0617ec
ENCFF307OXE.tabix.bed.gz.tbi 193.13 KB d2f8ee1714fe77af4eb4f7007a289a64
genomic_resource.yaml 2.78 KB 9bef197e5908b3874c9ae2a4646c9050
statistics/