Resource
| Id | DNase-seq/ENCSR946OIO |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR946OIO [biosample_summary="Homo sapiens spleen tissue female adult (59 years)"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (59 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF932JKV|/files/ENCFF932JKV/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.34. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR946OIO | float |
DNase-seq_ENCSR946OIO |
DNase-seq ENCSR946OIO [biosample_summary="Homo sapiens spleen tissue female adult (59 years)"]
|
 |
[0.0323, 16.2] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 30432309 | 0.95% | 151773 |
| chr1 | 2693614 | 1.08% | 13419 |
| chr2 | 2750916 | 1.14% | 13669 |
| chr3 | 1462163 | 0.74% | 7232 |
| chr4 | 802673 | 0.42% | 3874 |
| chr5 | 1429966 | 0.79% | 7101 |
| chr6 | 1207737 | 0.71% | 6069 |
| chr7 | 1639111 | 1.03% | 8237 |
| chr8 | 1394827 | 0.96% | 6885 |
| chr9 | 1427075 | 1.03% | 7067 |
| chr10 | 1860981 | 1.39% | 9200 |
| chr11 | 1888690 | 1.40% | 9242 |
| chr12 | 1155338 | 0.87% | 5847 |
| chr13 | 556195 | 0.49% | 2812 |
| chr14 | 1009663 | 0.94% | 5109 |
| chr15 | 1157734 | 1.14% | 5905 |
| chr16 | 1163226 | 1.29% | 5920 |
| chr17 | 1567337 | 1.88% | 7859 |
| chr18 | 567323 | 0.71% | 2858 |
| chr19 | 1197043 | 2.04% | 5962 |
| chr20 | 1072846 | 1.66% | 5455 |
| chr21 | 535105 | 1.15% | 2620 |
| chr22 | 1173295 | 2.31% | 5728 |
| chrX | 717851 | 0.46% | 3690 |
| chrY | 1600 | <0.01% | 13 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 151773 | 1 | 1080 | 200.51 | 185 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF523NCT.bed.gz | 1.45 MB | b3f205b27941c9c5c824ed429a559c2c |
| ENCFF523NCT.tabix.bed.gz | 1.37 MB | f67680f2d4fb2c931461065dd4486987 |
| ENCFF523NCT.tabix.bed.gz.tbi | 238.03 KB | 4ffe81c3056ed93ce91566dbc13f8b29 |
| genomic_resource.yaml | 2.03 KB | 60efcf04ef41b65a3b5fb6e184cb5a7e |
| statistics/ |