Resource
| Id | DNase-seq/ENCSR945JJB |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR945JJB [biosample_summary="Homo sapiens lung tissue female adult (47 years)"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (47 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF885LCW|/files/ENCFF885LCW/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.27. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR945JJB | float |
DNase-seq_ENCSR945JJB |
DNase-seq ENCSR945JJB [biosample_summary="Homo sapiens lung tissue female adult (47 years)"]
|
 |
[0.0462, 13.8] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 17828441 | 0.55% | 93926 |
| chr1 | 1704205 | 0.68% | 8925 |
| chr2 | 1591733 | 0.66% | 8427 |
| chr3 | 996587 | 0.50% | 5303 |
| chr4 | 566601 | 0.30% | 3047 |
| chr5 | 861455 | 0.47% | 4498 |
| chr6 | 918057 | 0.54% | 4859 |
| chr7 | 825381 | 0.52% | 4403 |
| chr8 | 721332 | 0.50% | 3836 |
| chr9 | 738505 | 0.53% | 3894 |
| chr10 | 1034554 | 0.77% | 5461 |
| chr11 | 936956 | 0.69% | 4923 |
| chr12 | 757953 | 0.57% | 3983 |
| chr13 | 374962 | 0.33% | 1967 |
| chr14 | 589761 | 0.55% | 3148 |
| chr15 | 656532 | 0.64% | 3473 |
| chr16 | 659880 | 0.73% | 3452 |
| chr17 | 903118 | 1.08% | 4657 |
| chr18 | 398610 | 0.50% | 2183 |
| chr19 | 889643 | 1.52% | 4509 |
| chr20 | 521920 | 0.81% | 2777 |
| chr21 | 255812 | 0.55% | 1333 |
| chr22 | 458132 | 0.90% | 2405 |
| chrX | 465938 | 0.30% | 2457 |
| chrY | 814 | <0.01% | 6 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 93926 | 1 | 1120 | 189.81 | 180 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF136IYG.bed.gz | 1006.74 KB | 5bacd9b6888edd2b82cf2a39631e0e2c |
| ENCFF136IYG.tabix.bed.gz | 924.43 KB | c33f8f7e3d49876360a5488cc8ed1159 |
| ENCFF136IYG.tabix.bed.gz.tbi | 319.15 KB | 7f3884b35c1c022b6a0dd02d85cc8438 |
| genomic_resource.yaml | 2.02 KB | eb8614e20b2f2997aad455917a3619a3 |
| statistics/ |