type: position_score
table:
  filename: ENCFF177DSB.tabix.bed.gz
  header_mode: none
  zero_based: true
  format: tabix
  chrom:
    column_index: 0
  pos_begin:
    column_index: 1
  pos_end:
    column_index: 2
scores:
- id: DNase-seq_ENCSR943SYS
  column_index: 3
  type: float
  desc: 'DNase-seq ENCSR943SYS [biosample_summary="Homo sapiens H9 G2 phase stably expressing CDT1, stably expressing GMNN"]'
  histogram:
    type: number
    number_of_bins: 100
meta:
  summary: 'DNase-seq ENCSR943SYS [biosample_summary="Homo sapiens H9 G2 phase stably expressing CDT1, stably expressing GMNN"]'
  description: '**status**: released


    **biological\_replicates**: Rep 1


    **summary**: stably expressing C-terminal DsRed-tagged CDT1, stably expressing
    N-terminal eGFP-tagged GMNN G2 phase


    **output\_type**: peaks


    **audit\_internal\_action**: Archived analysis {ENCAN633OPX|/analyses/ENCAN633OPX/}
    has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/}


    **audit\_warning**: Signal Portion of Tags (SPOT) is a measure of enrichment,
    analogous to the commonly used fraction of reads in peaks metric. ENCODE processed
    alignment files {ENCFF602SRQ|/files/ENCFF602SRQ/} processed by DNase-seq ENCODE3
    GRCh38 pipeline ({ENCPL202DNS|/pipelines/ENCPL202DNS/}) for GRCh38 assembly  have
    a SPOT1 score of 0.27. According to ENCODE standards, SPOT1 score of 0.4 or higher
    is considered a product of high quality data. Any sample with a SPOT1 score <0.3
    should be targeted for replacement with a higher quality sample, and a SPOT1 score
    of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally
    acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data
    standards|/data-standards/dnase-seq/})


    **audit\_warning**: Signal Portion of Tags (SPOT) is a measure of enrichment,
    analogous to the commonly used fraction of reads in peaks metric. ENCODE processed
    alignment files {ENCFF649ZAQ|/files/ENCFF649ZAQ/} processed by DNase-seq ENCODE3
    GRCh38 pipeline ({ENCPL202DNS|/pipelines/ENCPL202DNS/}) for GRCh38 assembly  have
    a SPOT1 score of 0.38. According to ENCODE standards, SPOT1 score of 0.4 or higher
    is considered a product of high quality data. Any sample with a SPOT1 score <0.3
    should be targeted for replacement with a higher quality sample, and a SPOT1 score
    of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally
    acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data
    standards|/data-standards/dnase-seq/})'
  labels:
    reference_genome: hg38/genomes/GRCh38-hg38
    accession: ENCSR943SYS
    status: released
    assay_term_name: DNase-seq
    simple_biosample_summary: stably expressing C-terminal DsRed-tagged CDT1, stably
      expressing N-terminal eGFP-tagged GMNN G2 phase
    biosample_summary: Homo sapiens H9 G2 phase stably expressing CDT1, stably expressing
      GMNN
    replication_type: isogenic
    biosample_ontology: /biosample-types/cell_line_EFO_0003045/
    perturbed: false
    doi: 10.17989/ENCSR943SYS
    date_created: '2016-03-30T17:23:16.132869+00:00'
    date_released: '2016-08-01'
    submitter_comment: ''