Resource

Id DNase-seq/ENCSR941MHZcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR941MHZ [biosample_summary="Homo sapiens CD4-positive, alpha-beta T cell female adult (39 years) treated with Interferon alpha-2 for 1 hour"]
Description
Labels
  • accession: ENCSR941MHZ
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000624/
  • biosample_summary: Homo sapiens CD4-positive, alpha-beta T cell female adult (39 years) treated with Interferon alpha-2 for 1 hour
  • date_created: 2021-11-18T17:43:07.982530+00:00
  • date_released: 2022-06-07
  • doi: 10.17989/ENCSR941MHZ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (39 years) treated with Interferon alpha-2 for 1 hour
  • status: released
  • submitter_comment: This dataset includes replicates and files that were previously associated with dataset ENCSR111WTE.

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR941MHZ float

DNase-seq_ENCSR941MHZ
DNase-seq ENCSR941MHZ [biosample_summary="Homo sapiens CD4-positive, alpha-beta T cell female adult (39 years) treated with Interferon alpha-2 for 1 hour"]
 HISTOGRAM FOR DNase-seq_ENCSR941MHZ [0.0558, 93.6]
n
19,695,820
mean
4.69
sd
9.7

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 196958200.61% 98851
chr1 1936706 0.78% 9727
chr2 1480876 0.61% 7485
chr3 1137018 0.57% 5767
chr4 756825 0.40% 3827
chr5 929073 0.51% 4688
chr6 1226536 0.72% 6070
chr7 947018 0.59% 4806
chr8 759156 0.52% 3887
chr9 771288 0.56% 3927
chr10 910061 0.68% 4534
chr11 1001353 0.74% 5000
chr12 996739 0.75% 5003
chr13 441766 0.39% 2240
chr14 729162 0.68% 3622
chr15 647670 0.64% 3260
chr16 711515 0.79% 3551
chr17 1069292 1.28% 5329
chr18 347498 0.43% 1774
chr19 1073485 1.83% 5128
chr20 524793 0.81% 2674
chr21 228782 0.49% 1161
chr22 425707 0.84% 2159
chrX 612295 0.39% 3071
chrY 31206 0.05% 161
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 98851 4 1120 199.25 200
global segment-length histogram

Files

Filename Size md5
ENCFF152WTJ.bed.gz 1.08 MB 95e9452c2fb343b44ad1f64524468944
ENCFF152WTJ.tabix.bed.gz 1017.65 KB 069e789f293f341e4cbb2f8286991d29
ENCFF152WTJ.tabix.bed.gz.tbi 363.0 KB 9ad22a8cbb0859b63390757a996daa82
genomic_resource.yaml 1.59 KB f7e5fdd300a2b992480ce5daaef58fe5
statistics/