Resource

Id DNase-seq/ENCSR941DTJcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR941DTJ [biosample_summary="Homo sapiens kidney tissue female embryo (108 days)"]
Description
Labels
  • accession: ENCSR941DTJ
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002113/
  • biosample_summary: Homo sapiens kidney tissue female embryo (108 days)
  • date_created: 2015-09-16T21:42:50.350543+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR941DTJ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female embryo (108 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR941DTJ float

DNase-seq_ENCSR941DTJ
DNase-seq ENCSR941DTJ [biosample_summary="Homo sapiens kidney tissue female embryo (108 days)"]
 HISTOGRAM FOR DNase-seq_ENCSR941DTJ [3, 1.1e+03]
n
11,491,062
mean
59.6
sd
78.1

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 114910620.36% 76363
chr1 1040085 0.42% 6912
chr2 912118 0.38% 6060
chr3 724409 0.37% 4808
chr4 579839 0.30% 3846
chr5 623728 0.34% 4147
chr6 669568 0.39% 4448
chr7 594430 0.37% 3950
chr8 515487 0.36% 3423
chr9 491390 0.36% 3267
chr10 564327 0.42% 3753
chr11 588363 0.44% 3914
chr12 572745 0.43% 3809
chr13 308483 0.27% 2047
chr14 365100 0.34% 2429
chr15 370796 0.36% 2469
chr16 403156 0.45% 2680
chr17 489528 0.59% 3251
chr18 261320 0.33% 1731
chr19 451794 0.77% 3010
chr20 306600 0.48% 2041
chr21 132993 0.28% 882
chr22 210545 0.41% 1398
chrX 313358 0.20% 2082
chrY 900 <0.01% 6
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 76363 8 353 150.48 150
global segment-length histogram

Files

Filename Size md5
ENCFF744IAP.bed.gz 742.74 KB bf1d96fc23694398757de1fd5c2f4069
ENCFF744IAP.tabix.bed.gz 636.59 KB 12cc71406bdf444923a81fc21153873e
ENCFF744IAP.tabix.bed.gz.tbi 392.07 KB c8b6d4735d80648c83e66f1322e0e4fe
genomic_resource.yaml 1.39 KB 74811b868eb803d33aa2b1307b4f1a47
statistics/