Resource

Id DNase-seq/ENCSR937UWIcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR937UWI [biosample_summary="Homo sapiens hematopoietic multipotent progenitor cell treated with interleukin-3 for 15 days, kit ligand for 15 days, hydrocortisone succinate for 15 days, erythropoietin for 15 days"]
Description
Labels
  • accession: ENCSR937UWI
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/in_vitro_differentiated_cells_CL_0000837/
  • biosample_summary: Homo sapiens hematopoietic multipotent progenitor cell treated with interleukin-3 for 15 days, kit ligand for 15 days, hydrocortisone succinate for 15 days, erythropoietin for 15 days
  • date_created: 2015-03-29T22:10:50.321073+00:00
  • date_released: 2015-11-05
  • doi: 10.17989/ENCSR937UWI
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary: male adult (25 years) treated with interleukin-3 for 15 days, kit ligand for 15 days, hydrocortisone succinate for 15 days, erythropoietin for 15 days
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR937UWI float

DNase-seq_ENCSR937UWI
DNase-seq ENCSR937UWI [biosample_summary="Homo sapiens hematopoietic multipotent progenitor cell treated with interleukin-3 for 15 days, kit ligand for 15 days, hydrocortisone succinate for 15 days, erythropoietin for 15 days"]
 HISTOGRAM FOR DNase-seq_ENCSR937UWI [5, 150]
n
17,378,800
mean
78.9
sd
34.4

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 173788000.54% 122779
chr1 1817660 0.73% 12911
chr2 1247290 0.51% 8807
chr3 1050700 0.53% 7399
chr4 684730 0.36% 4844
chr5 821070 0.45% 5760
chr6 1087220 0.64% 7654
chr7 806750 0.51% 5755
chr8 666500 0.46% 4697
chr9 725150 0.52% 5101
chr10 737520 0.55% 5228
chr11 926790 0.69% 6453
chr12 890710 0.67% 6291
chr13 366310 0.32% 2588
chr14 570090 0.53% 4012
chr15 558230 0.55% 3938
chr16 683610 0.76% 4860
chr17 929230 1.12% 6667
chr18 288460 0.36% 2004
chr19 877410 1.50% 6182
chr20 483310 0.75% 3389
chr21 189330 0.41% 1349
chr22 437830 0.86% 3104
chrX 492260 0.32% 3457
chrY 40640 0.07% 329
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 122779 10 350 141.55 150
global segment-length histogram

Files

Filename Size md5
ENCFF269RYB.bed.gz 1.05 MB 30209b97ebcf71b8359e03efffbf6795
ENCFF269RYB.tabix.bed.gz 989.77 KB 2c3ef67ff7a7958d672450a2394da885
ENCFF269RYB.tabix.bed.gz.tbi 365.24 KB eeebbd0f8f2441a302f1416107e61bd1
genomic_resource.yaml 2.07 KB f40c4ac273f3d0439f4ca7c6ae4306ae
statistics/