Resource

Id DNase-seq/ENCSR935HEIcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR935HEI [biosample_summary="Homo sapiens activated CD4-positive, alpha-beta T cell male adult (20 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours"]
Description
Labels
  • accession: ENCSR935HEI
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000896/
  • biosample_summary: Homo sapiens activated CD4-positive, alpha-beta T cell male adult (20 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours
  • date_created: 2019-12-16T16:37:28.026746+00:00
  • date_released: 2020-09-28
  • doi: 10.17989/ENCSR935HEI
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (20 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR935HEI float

DNase-seq_ENCSR935HEI
DNase-seq ENCSR935HEI [biosample_summary="Homo sapiens activated CD4-positive, alpha-beta T cell male adult (20 years) treated with anti-CD3 and anti-CD28 coated beads for 36 hours"]
 HISTOGRAM FOR DNase-seq_ENCSR935HEI [0.0326, 74]
n
24,833,508
mean
3.71
sd
6.74

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 248335080.77% 135130
chr1 2402064 0.96% 13021
chr2 1814360 0.75% 10005
chr3 1347623 0.68% 7393
chr4 930085 0.49% 5117
chr5 1164102 0.64% 6395
chr6 1410313 0.83% 7728
chr7 1183726 0.74% 6496
chr8 1049644 0.72% 5815
chr9 1024138 0.74% 5604
chr10 1162853 0.87% 6344
chr11 1316495 0.97% 7076
chr12 1177141 0.88% 6425
chr13 558609 0.49% 3076
chr14 883204 0.83% 4806
chr15 826251 0.81% 4524
chr16 1020153 1.13% 5486
chr17 1351518 1.62% 7166
chr18 473904 0.59% 2603
chr19 1289249 2.20% 6704
chr20 739260 1.15% 4030
chr21 336018 0.72% 1830
chr22 601684 1.18% 3241
chrX 734139 0.47% 4038
chrY 36975 0.06% 207
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 135130 3 940 183.77 180
global segment-length histogram

Files

Filename Size md5
ENCFF615ZGF.bed.gz 1.48 MB 6c5b6bc11686aa319b3c6f6efecac2ce
ENCFF615ZGF.tabix.bed.gz 1.36 MB 2c47e27767d20ba00641a3c91c6c892b
ENCFF615ZGF.tabix.bed.gz.tbi 434.85 KB f041c29bf42855fe1f31c9ae1ca21ba9
genomic_resource.yaml 1.6 KB 61e96f50822d35319e89d350246ca966
statistics/