Resource

Id DNase-seq/ENCSR934IKScontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR934IKS [biosample_summary="Homo sapiens T-cell female adult (33 years)"]
Description
Labels
  • accession: ENCSR934IKS
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000084/
  • biosample_summary: Homo sapiens T-cell female adult (33 years)
  • date_created: 2020-04-18T05:18:58.765162+00:00
  • date_released: 2020-09-25
  • doi: 10.17989/ENCSR934IKS
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (33 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR934IKS float

DNase-seq_ENCSR934IKS

DNase-seq ENCSR934IKS [biosample_summary="Homo sapiens T-cell female adult (33 years)"]
HISTOGRAM FOR DNase-seq_ENCSR934IKS [0.14, 30.1]
n
7,637,956
mean
3.99
sd
3.4

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 76379560.24% 34921
chr1 798712 0.32% 3620
chr2 513638 0.21% 2378
chr3 400836 0.20% 1832
chr4 256583 0.13% 1139
chr5 331046 0.18% 1512
chr6 441873 0.26% 1990
chr7 349116 0.22% 1608
chr8 269887 0.19% 1264
chr9 310153 0.22% 1423
chr10 329912 0.25% 1478
chr11 399957 0.30% 1840
chr12 397937 0.30% 1789
chr13 149997 0.13% 677
chr14 267459 0.25% 1216
chr15 245213 0.24% 1143
chr16 323582 0.36% 1504
chr17 487132 0.59% 2245
chr18 106505 0.13% 496
chr19 544956 0.93% 2442
chr20 206007 0.32% 989
chr21 90193 0.19% 419
chr22 201373 0.40% 941
chrX 215889 0.14% 976
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 34921 2 880 218.72 200
global segment-length histogram

Files

Filename Size md5
ENCFF574QFK.bed.gz 379.01 KB a2f296a91a27ad80658b099b280133d8
ENCFF574QFK.tabix.bed.gz 350.72 KB 35b4c391eba7d35315cbe00dc55451b3
ENCFF574QFK.tabix.bed.gz.tbi 185.09 KB ac5f70e0aef8da02be937d4d41936e09
genomic_resource.yaml 1.19 KB 00c10382ad908eb2655dcd749ce129a9
statistics/