Resource

Id DNase-seq/ENCSR933HFMcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR933HFM [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-12 subunit alpha for 4 hours, 100 ng/mL Interleukin-12 subunit beta for 4 hours"]
Description
Labels
  • accession: ENCSR933HFM
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000663/
  • biosample_summary: Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-12 subunit alpha for 4 hours, 100 ng/mL Interleukin-12 subunit beta for 4 hours
  • date_created: 2020-04-19T18:36:52.132646+00:00
  • date_released: 2020-09-23
  • doi: 10.17989/ENCSR933HFM
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-12 subunit alpha for 4 hours, 100 ng/mL Interleukin-12 subunit beta for 4 hours
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR933HFM float

DNase-seq_ENCSR933HFM
DNase-seq ENCSR933HFM [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours, 100 ng/mL Interleukin-12 subunit alpha for 4 hours, 100 ng/mL Interleukin-12 subunit beta for 4 hours"]
 HISTOGRAM FOR DNase-seq_ENCSR933HFM [0.155, 58.4]
n
10,141,282
mean
6.45
sd
7.52

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 101412820.32% 53638
chr1 1031368 0.41% 5436
chr2 700251 0.29% 3724
chr3 544138 0.27% 2853
chr4 357095 0.19% 1871
chr5 450171 0.25% 2395
chr6 585056 0.34% 3082
chr7 458508 0.29% 2427
chr8 374696 0.26% 2024
chr9 425251 0.31% 2257
chr10 451464 0.34% 2358
chr11 503428 0.37% 2674
chr12 524104 0.39% 2765
chr13 197883 0.17% 1034
chr14 343829 0.32% 1809
chr15 328423 0.32% 1751
chr16 426165 0.47% 2285
chr17 629404 0.76% 3295
chr18 164565 0.20% 868
chr19 673927 1.15% 3500
chr20 284378 0.44% 1556
chr21 125562 0.27% 649
chr22 256394 0.50% 1370
chrX 295489 0.19% 1600
chrY 9733 0.02% 55
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 53638 6 820 189.07 180
global segment-length histogram

Files

Filename Size md5
ENCFF308TRS.bed.gz 597.2 KB 433bd52183189cb7184f85c291df8d6e
ENCFF308TRS.tabix.bed.gz 543.89 KB 20db3c12b233a1c94a2756cfa6deeb86
ENCFF308TRS.tabix.bed.gz.tbi 242.49 KB 0d15fe507af1a0a40f4593028cbb96aa
genomic_resource.yaml 2.15 KB 442885bca98d9b9220ed2a1c76489f7e
statistics/