Resource

Id DNase-seq/ENCSR933GMMcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR933GMM [biosample_summary="Homo sapiens right lobe of liver tissue female adult (41 years)"]
Description
Labels
  • accession: ENCSR933GMM
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001114/
  • biosample_summary: Homo sapiens right lobe of liver tissue female adult (41 years)
  • date_created: 2019-11-01T20:42:43.368270+00:00
  • date_released: 2020-10-02
  • doi: 10.17989/ENCSR933GMM
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (41 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR933GMM float

DNase-seq_ENCSR933GMM

DNase-seq ENCSR933GMM [biosample_summary="Homo sapiens right lobe of liver tissue female adult (41 years)"]
HISTOGRAM FOR DNase-seq_ENCSR933GMM [0.0507, 44.3]
n
20,108,954
mean
2.6
sd
3.64

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 201089540.63% 107006
chr1 1826808 0.73% 9767
chr2 1362652 0.56% 7431
chr3 1070486 0.54% 5786
chr4 816913 0.43% 4309
chr5 897146 0.49% 4833
chr6 894119 0.52% 4907
chr7 958185 0.60% 5101
chr8 937045 0.65% 4965
chr9 971429 0.70% 5126
chr10 969093 0.72% 5220
chr11 1203770 0.89% 6203
chr12 864941 0.65% 4651
chr13 373737 0.33% 2005
chr14 674192 0.63% 3560
chr15 612021 0.60% 3323
chr16 847152 0.94% 4516
chr17 1159992 1.39% 6097
chr18 339013 0.42% 1882
chr19 1123514 1.92% 5733
chr20 637805 0.99% 3433
chr21 387310 0.83% 1983
chr22 715978 1.41% 3684
chrX 464873 0.30% 2484
chrY 780 <0.01% 7
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 107006 1 927 187.92 180
global segment-length histogram

Files

Filename Size md5
ENCFF912XTH.bed.gz 1.14 MB 38e57059474ccaf3ea84dd7acf355921
ENCFF912XTH.tabix.bed.gz 1.05 MB 39f977ff8594ffe02257896922a6298f
ENCFF912XTH.tabix.bed.gz.tbi 336.98 KB a75f52734611cec7a463c33d311e2034
genomic_resource.yaml 1.25 KB c1c462f7e17e4a8bd1c446cd917acb2f
statistics/