Resource
| Id | DNase-seq/ENCSR932OSG |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR932OSG [biosample_summary="Homo sapiens activated T-helper 1 cell male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 16 hours, 50 U/mL Interleukin-2 for 16 hours"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 16 hours, 50 U/mL Interleukin-2 for 16 hours output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF943AFY|/files/ENCFF943AFY/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.38. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR932OSG | float |
DNase-seq_ENCSR932OSG |
DNase-seq ENCSR932OSG [biosample_summary="Homo sapiens activated T-helper 1 cell male adult (42 years) treated with anti-CD3 and anti-CD28 coated beads for 16 hours, 50 U/mL Interleukin-2 for 16 hours"]
|
 |
[0.133, 27.9] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 6089733 | 0.19% | 31658 |
| chr1 | 623816 | 0.25% | 3263 |
| chr2 | 408612 | 0.17% | 2125 |
| chr3 | 314911 | 0.16% | 1600 |
| chr4 | 206213 | 0.11% | 1058 |
| chr5 | 273324 | 0.15% | 1390 |
| chr6 | 335776 | 0.20% | 1764 |
| chr7 | 274780 | 0.17% | 1421 |
| chr8 | 219450 | 0.15% | 1164 |
| chr9 | 245204 | 0.18% | 1268 |
| chr10 | 279245 | 0.21% | 1477 |
| chr11 | 328272 | 0.24% | 1713 |
| chr12 | 309430 | 0.23% | 1581 |
| chr13 | 118031 | 0.10% | 596 |
| chr14 | 212878 | 0.20% | 1097 |
| chr15 | 191625 | 0.19% | 1015 |
| chr16 | 256418 | 0.28% | 1337 |
| chr17 | 382901 | 0.46% | 2019 |
| chr18 | 84572 | 0.11% | 443 |
| chr19 | 449662 | 0.77% | 2284 |
| chr20 | 171919 | 0.27% | 925 |
| chr21 | 70205 | 0.15% | 375 |
| chr22 | 158816 | 0.31% | 850 |
| chrX | 167178 | 0.11% | 860 |
| chrY | 6495 | 0.01% | 33 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 31658 | 2 | 720 | 192.36 | 180 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF760ZCG.bed.gz | 352.16 KB | cd9f1399e7a442a61c12307403f77159 |
| ENCFF760ZCG.tabix.bed.gz | 320.98 KB | 23c9f016fc1f35a06e7718d165569177 |
| ENCFF760ZCG.tabix.bed.gz.tbi | 167.16 KB | aacee4346043cf8ce1be37f6512f7456 |
| genomic_resource.yaml | 2.72 KB | 0bf211c4fc268f1f37ce55bf23ff02d4 |
| statistics/ |