Resource

Id DNase-seq/ENCSR930YSBcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR930YSB [biosample_summary="Homo sapiens stomach tissue female embryo (96 days)"]
Description
Labels
  • accession: ENCSR930YSB
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0000945/
  • biosample_summary: Homo sapiens stomach tissue female embryo (96 days)
  • date_created: 2015-09-16T21:42:24.261089+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR930YSB
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female embryo (96 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR930YSB float

DNase-seq_ENCSR930YSB
DNase-seq ENCSR930YSB [biosample_summary="Homo sapiens stomach tissue female embryo (96 days)"]
 HISTOGRAM FOR DNase-seq_ENCSR930YSB [4, 1.86e+03]
n
16,638,821
mean
60.5
sd
63.5

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 166388210.52% 110434
chr1 1541639 0.62% 10234
chr2 1310696 0.54% 8689
chr3 1061004 0.54% 7042
chr4 863647 0.45% 5731
chr5 904962 0.50% 6005
chr6 1020190 0.60% 6765
chr7 843012 0.53% 5592
chr8 758506 0.52% 5037
chr9 677275 0.49% 4492
chr10 797107 0.60% 5285
chr11 841365 0.62% 5590
chr12 839878 0.63% 5577
chr13 466837 0.41% 3092
chr14 540900 0.51% 3591
chr15 537953 0.53% 3573
chr16 536966 0.59% 3567
chr17 725952 0.87% 4826
chr18 374387 0.47% 2477
chr19 611542 1.04% 4071
chr20 425755 0.66% 2827
chr21 189967 0.41% 1261
chr22 281317 0.55% 1873
chrX 486014 0.31% 3224
chrY 1950 <0.01% 13
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 110434 11 527 150.67 150
global segment-length histogram

Files

Filename Size md5
ENCFF749DUT.bed.gz 1.04 MB 50b0226b95659efb8279834987cc1565
ENCFF749DUT.tabix.bed.gz 913.52 KB d0f334cf7cb1fcd3784b51bfd68b7c03
ENCFF749DUT.tabix.bed.gz.tbi 464.71 KB 2fe252bfc9f5f0dafb265f6e42ab7c2a
genomic_resource.yaml 2.19 KB 83c95d28d4bf1dd854d66bfcc6b26423
statistics/