Resource

Id DNase-seq/ENCSR930PDTcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR930PDT [biosample_summary="Homo sapiens ovary tissue female adult (53 years)"]
Description
Labels
  • accession: ENCSR930PDT
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0000992/
  • biosample_summary: Homo sapiens ovary tissue female adult (53 years)
  • date_created: 2019-07-29T20:40:56.614111+00:00
  • date_released: 2019-11-08
  • doi: 10.17989/ENCSR930PDT
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (53 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR930PDT float

DNase-seq_ENCSR930PDT

DNase-seq ENCSR930PDT [biosample_summary="Homo sapiens ovary tissue female adult (53 years)"]
HISTOGRAM FOR DNase-seq_ENCSR930PDT [0.0383, 57.1]
n
19,858,449
mean
2.82
sd
4.85

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 198584490.62% 101433
chr1 1928989 0.77% 9836
chr2 1566726 0.65% 8003
chr3 1125360 0.57% 5803
chr4 713238 0.37% 3715
chr5 851549 0.47% 4517
chr6 943867 0.55% 4882
chr7 896359 0.56% 4644
chr8 791321 0.55% 4112
chr9 1000284 0.72% 5022
chr10 974014 0.73% 5045
chr11 1163570 0.86% 5869
chr12 888842 0.67% 4548
chr13 340526 0.30% 1792
chr14 707686 0.66% 3580
chr15 659175 0.65% 3387
chr16 760579 0.84% 3883
chr17 1109627 1.33% 5568
chr18 353211 0.44% 1873
chr19 1065887 1.82% 5129
chr20 601095 0.93% 3054
chr21 331258 0.71% 1572
chr22 557632 1.10% 2819
chrX 527432 0.34% 2778
chrY 222 <0.01% 2
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 101433 1 1220 195.78 180
global segment-length histogram

Files

Filename Size md5
ENCFF663IMO.bed.gz 1.09 MB 3d9726a50f3cfcbcdbba7cab759a2111
ENCFF663IMO.tabix.bed.gz 1.01 MB f2108eb1fd0969ed78dd13290707f769
ENCFF663IMO.tabix.bed.gz.tbi 314.57 KB 59b5749876fa6d985b026ebe14ba45ec
genomic_resource.yaml 1.21 KB a9db9c612704916ee4a2826388d251f1
statistics/