Resource

Id DNase-seq/ENCSR928SYEcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR928SYE [biosample_summary="Homo sapiens left renal cortex interstitium tissue male embryo (105 days)"]
Description
Labels
  • accession: ENCSR928SYE
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0018117/
  • biosample_summary: Homo sapiens left renal cortex interstitium tissue male embryo (105 days)
  • date_created: 2015-09-16T21:42:33.249773+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR928SYE
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male embryo (105 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR928SYE float

DNase-seq_ENCSR928SYE
DNase-seq ENCSR928SYE [biosample_summary="Homo sapiens left renal cortex interstitium tissue male embryo (105 days)"]
 HISTOGRAM FOR DNase-seq_ENCSR928SYE [2, 1.8e+03]
n
16,168,760
mean
55.3
sd
59.3

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 161687600.50% 107442
chr1 1432565 0.58% 9521
chr2 1331851 0.55% 8844
chr3 1062385 0.54% 7058
chr4 887344 0.47% 5885
chr5 911423 0.50% 6047
chr6 972696 0.57% 6466
chr7 852088 0.53% 5652
chr8 760073 0.52% 5054
chr9 674116 0.49% 4483
chr10 800055 0.60% 5312
chr11 818229 0.61% 5435
chr12 784019 0.59% 5218
chr13 453170 0.40% 3007
chr14 518820 0.48% 3448
chr15 527510 0.52% 3509
chr16 504944 0.56% 3358
chr17 638034 0.77% 4252
chr18 393687 0.49% 2616
chr19 532375 0.91% 3546
chr20 404400 0.63% 2692
chr21 183829 0.39% 1220
chr22 274689 0.54% 1825
chrX 432770 0.28% 2876
chrY 17688 0.03% 118
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 107442 22 450 150.49 150
global segment-length histogram

Files

Filename Size md5
ENCFF206SZY.bed.gz 1.02 MB b30798d2a9c0d266bff8e49de12df5a0
ENCFF206SZY.tabix.bed.gz 892.52 KB c99ffcd212abcc68c8f71978ffe3e2b0
ENCFF206SZY.tabix.bed.gz.tbi 485.59 KB 207ee18da6f2a0e555ebfb4f0c4c5c38
genomic_resource.yaml 1.46 KB a1ca83f9f1863d909f5d6f0a738a52e2
statistics/