Resource
| Id | DNase-seq/ENCSR924IHU |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR924IHU [biosample_summary="Homo sapiens posterior cingulate gyrus tissue female adult (84 years)"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (84 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF553KDH|/files/ENCFF553KDH/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.30. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR924IHU | float |
DNase-seq_ENCSR924IHU |
DNase-seq ENCSR924IHU [biosample_summary="Homo sapiens posterior cingulate gyrus tissue female adult (84 years)"]
|
 |
[0.0637, 13.2] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 16615522 | 0.52% | 89033 |
| chr1 | 1501060 | 0.60% | 8076 |
| chr2 | 1563489 | 0.65% | 8283 |
| chr3 | 812390 | 0.41% | 4427 |
| chr4 | 499919 | 0.26% | 2710 |
| chr5 | 713238 | 0.39% | 3830 |
| chr6 | 657906 | 0.39% | 3609 |
| chr7 | 862641 | 0.54% | 4646 |
| chr8 | 711082 | 0.49% | 3837 |
| chr9 | 774521 | 0.56% | 4123 |
| chr10 | 1089203 | 0.81% | 5843 |
| chr11 | 906517 | 0.67% | 4813 |
| chr12 | 675635 | 0.51% | 3631 |
| chr13 | 341751 | 0.30% | 1862 |
| chr14 | 566619 | 0.53% | 3041 |
| chr15 | 609275 | 0.60% | 3300 |
| chr16 | 641276 | 0.71% | 3426 |
| chr17 | 864980 | 1.04% | 4686 |
| chr18 | 313498 | 0.39% | 1698 |
| chr19 | 752721 | 1.28% | 3854 |
| chr20 | 533766 | 0.83% | 2889 |
| chr21 | 278522 | 0.60% | 1434 |
| chr22 | 667115 | 1.31% | 3506 |
| chrX | 277496 | 0.18% | 1502 |
| chrY | 902 | <0.01% | 7 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 89033 | 1 | 1160 | 186.62 | 180 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF900IJE.bed.gz | 912.79 KB | 27120ece83044c78ba050d7606cb74dc |
| ENCFF900IJE.tabix.bed.gz | 837.34 KB | 33cf4cb7ae582b35cb66b80778f34658 |
| ENCFF900IJE.tabix.bed.gz.tbi | 253.56 KB | 7438936bbd39a7f6b26165c51c1a1485 |
| genomic_resource.yaml | 2.09 KB | 2d9f39ea05b2b2b4b0b08a3a1b64cd37 |
| statistics/ |