Resource

Id DNase-seq/ENCSR923JYHcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR923JYH [biosample_summary="Homo sapiens transverse colon tissue male adult (37 years)"]
Description
Labels
  • accession: ENCSR923JYH
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001157/
  • biosample_summary: Homo sapiens transverse colon tissue male adult (37 years)
  • date_created: 2019-07-29T20:41:32.360272+00:00
  • date_released: 2019-11-08
  • doi: 10.17989/ENCSR923JYH
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (37 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR923JYH float

DNase-seq_ENCSR923JYH

DNase-seq ENCSR923JYH [biosample_summary="Homo sapiens transverse colon tissue male adult (37 years)"]
HISTOGRAM FOR DNase-seq_ENCSR923JYH [7, 9.35e+03]
n
7,845,223
mean
95.3
sd
98.6

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 78452230.24% 52230
chr1 797069 0.32% 5305
chr2 603542 0.25% 4020
chr3 469405 0.24% 3127
chr4 333866 0.18% 2224
chr5 386285 0.21% 2572
chr6 456655 0.27% 3043
chr7 374054 0.23% 2490
chr8 321750 0.22% 2141
chr9 333081 0.24% 2221
chr10 374142 0.28% 2490
chr11 419700 0.31% 2790
chr12 388937 0.29% 2589
chr13 168600 0.15% 1120
chr14 262775 0.25% 1749
chr15 264150 0.26% 1760
chr16 308976 0.34% 2055
chr17 401907 0.48% 2675
chr18 142650 0.18% 948
chr19 366736 0.63% 2444
chr20 211646 0.33% 1409
chr21 91950 0.20% 612
chr22 161053 0.32% 1072
chrX 193914 0.12% 1291
chrY 12380 0.02% 83
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 52230 17 300 150.21 150
global segment-length histogram

Files

Filename Size md5
ENCFF484EYC.bed.gz 526.13 KB 8e9279bb169cc6f7499e0ec3473a7e17
ENCFF484EYC.tabix.bed.gz 446.97 KB d4d3b138e7da9bc1c2fd68d9b6102bd7
ENCFF484EYC.tabix.bed.gz.tbi 274.77 KB 97f83fec97bdc406c1c384dab74b7c79
genomic_resource.yaml 2.21 KB 7f9c4819d258117ba1190db4bda637e1
statistics/