Resource

Id DNase-seq/ENCSR920JUMcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR920JUM [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL Interleukin-4 for 1 hour"]
Description
Labels
  • accession: ENCSR920JUM
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000663/
  • biosample_summary: Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL Interleukin-4 for 1 hour
  • date_created: 2020-04-19T18:36:53.462629+00:00
  • date_released: 2020-09-23
  • doi: 10.17989/ENCSR920JUM
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL Interleukin-4 for 1 hour
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR920JUM float

DNase-seq_ENCSR920JUM
DNase-seq ENCSR920JUM [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL Interleukin-4 for 1 hour"]
 HISTOGRAM FOR DNase-seq_ENCSR920JUM [0.077, 82]
n
11,827,432
mean
6.65
sd
9.22

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 118274320.37% 63958
chr1 1199769 0.48% 6429
chr2 818574 0.34% 4465
chr3 634267 0.32% 3404
chr4 406001 0.21% 2167
chr5 516880 0.28% 2808
chr6 686240 0.40% 3704
chr7 532845 0.33% 2906
chr8 455791 0.31% 2462
chr9 489655 0.35% 2646
chr10 525826 0.39% 2844
chr11 614827 0.46% 3355
chr12 596362 0.45% 3198
chr13 225988 0.20% 1205
chr14 406524 0.38% 2214
chr15 383188 0.38% 2099
chr16 489522 0.54% 2653
chr17 732652 0.88% 3963
chr18 191346 0.24% 1039
chr19 775800 1.32% 4132
chr20 330866 0.51% 1831
chr21 144716 0.31% 786
chr22 300231 0.59% 1613
chrX 356584 0.23% 1962
chrY 12978 0.02% 73
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 63958 2 860 184.92 180
global segment-length histogram

Files

Filename Size md5
ENCFF317ZIC.bed.gz 721.71 KB 87c79ca80a227d2d378064a17138ed1e
ENCFF317ZIC.tabix.bed.gz 659.51 KB 8884c65d6238cf3626948bc006cfa07d
ENCFF317ZIC.tabix.bed.gz.tbi 263.12 KB 904081e9e258b3965451f93f4c5db0ff
genomic_resource.yaml 1.81 KB 831843a174326ab93429916246187eb9
statistics/