Resource

Id DNase-seq/ENCSR913NYLcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR913NYL [biosample_summary="Homo sapiens renal pelvis tissue male embryo (108 days)"]
Description
Labels
  • accession: ENCSR913NYL
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001224/
  • biosample_summary: Homo sapiens renal pelvis tissue male embryo (108 days)
  • date_created: 2015-09-16T21:42:31.159321+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR913NYL
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male embryo (108 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR913NYL float

DNase-seq_ENCSR913NYL
DNase-seq ENCSR913NYL [biosample_summary="Homo sapiens renal pelvis tissue male embryo (108 days)"]
 HISTOGRAM FOR DNase-seq_ENCSR913NYL [0.274, 30]
n
10,062,406
mean
3.2
sd
3.32

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 100624060.31% 57130
chr1 916448 0.37% 5183
chr2 802421 0.33% 4582
chr3 644665 0.33% 3697
chr4 525808 0.28% 3011
chr5 547809 0.30% 3127
chr6 598475 0.35% 3404
chr7 509605 0.32% 2936
chr8 452254 0.31% 2598
chr9 429095 0.31% 2444
chr10 482762 0.36% 2795
chr11 520803 0.39% 2952
chr12 498196 0.37% 2832
chr13 264221 0.23% 1524
chr14 325267 0.30% 1823
chr15 330661 0.32% 1880
chr16 330549 0.37% 1858
chr17 418321 0.50% 2301
chr18 221377 0.28% 1289
chr19 435759 0.74% 2234
chr20 269314 0.42% 1546
chr21 106445 0.23% 614
chr22 172060 0.34% 995
chrX 251466 0.16% 1460
chrY 8625 0.02% 45
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 57130 1 820 176.13 176
global segment-length histogram

Files

Filename Size md5
ENCFF579HAX.bed.gz 609.47 KB e07b873d6b449e9a2a9a61ae9740f81c
ENCFF579HAX.tabix.bed.gz 541.07 KB 62089d7c606e1ab51a4a831b69eb810d
ENCFF579HAX.tabix.bed.gz.tbi 323.29 KB 97991af3f55635cb9f2395409b40e394
genomic_resource.yaml 1.83 KB b64a23095ba75868ded278625d3ef411
statistics/