Resource

Id DNase-seq/ENCSR909YETcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR909YET [biosample_summary="Homo sapiens upper lobe of left lung tissue male adult (60 years)"]
Description
Labels
  • accession: ENCSR909YET
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0008952/
  • biosample_summary: Homo sapiens upper lobe of left lung tissue male adult (60 years)
  • date_created: 2019-11-01T17:50:58.070832+00:00
  • date_released: 2020-10-02
  • doi: 10.17989/ENCSR909YET
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (60 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR909YET float

DNase-seq_ENCSR909YET
DNase-seq ENCSR909YET [biosample_summary="Homo sapiens upper lobe of left lung tissue male adult (60 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR909YET [0.0412, 172]
n
46,348,038
mean
2.07
sd
5.45

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 463480381.44% 229267
chr1 3874236 1.56% 18800
chr2 3353200 1.38% 17284
chr3 2230994 1.13% 11580
chr4 2303507 1.21% 11328
chr5 2223938 1.23% 11276
chr6 2125444 1.24% 11041
chr7 2597475 1.63% 12862
chr8 2228730 1.54% 10970
chr9 2351003 1.70% 11274
chr10 2151524 1.61% 10863
chr11 2585390 1.91% 12497
chr12 1911327 1.43% 9704
chr13 1212899 1.06% 6175
chr14 1584887 1.48% 7559
chr15 1283717 1.26% 6619
chr16 2216400 2.45% 10330
chr17 2140286 2.57% 10434
chr18 1006252 1.25% 5169
chr19 2371343 4.05% 11104
chr20 1458167 2.26% 7001
chr21 818592 1.75% 3954
chr22 1334128 2.63% 6288
chrX 890022 0.57% 4678
chrY 94577 0.17% 477
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 229267 1 1340 202.16 199
global segment-length histogram

Files

Filename Size md5
ENCFF751WMO.bed.gz 2.35 MB b0a73dc7b4d0a206f7a79eb91aa65a4d
ENCFF751WMO.tabix.bed.gz 2.17 MB 2da68c2945a282edabd658f19f0df67c
ENCFF751WMO.tabix.bed.gz.tbi 648.0 KB 74aa8fbe47412cde202ee10553992080
genomic_resource.yaml 1.25 KB b557a48d19198a274e90406a234c207f
statistics/