Resource

Id DNase-seq/ENCSR903SKEcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR903SKE [biosample_summary="Homo sapiens DND-41"]
Description
Labels
  • accession: ENCSR903SKE
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0007074/
  • biosample_summary: Homo sapiens DND-41
  • date_created: 2019-09-15T05:05:11.540448+00:00
  • date_released: 2020-10-06
  • doi: 10.17989/ENCSR903SKE
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR903SKE float

DNase-seq_ENCSR903SKE

DNase-seq ENCSR903SKE [biosample_summary="Homo sapiens DND-41"]
HISTOGRAM FOR DNase-seq_ENCSR903SKE [0.0439, 86.7]
n
18,099,350
mean
4.8
sd
8.97

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 180993500.56% 92725
chr1 1699171 0.68% 8677
chr2 1434072 0.59% 7436
chr3 1089757 0.55% 5572
chr4 681038 0.36% 3566
chr5 876079 0.48% 4548
chr6 984960 0.58% 5018
chr7 861534 0.54% 4412
chr8 675428 0.47% 3576
chr9 649962 0.47% 3348
chr10 850140 0.64% 4358
chr11 909617 0.67% 4655
chr12 862205 0.65% 4400
chr13 404035 0.35% 2095
chr14 673389 0.63% 3471
chr15 559632 0.55% 2908
chr16 711183 0.79% 3568
chr17 969623 1.16% 4814
chr18 350761 0.44% 1819
chr19 905089 1.54% 4473
chr20 601098 0.93% 3088
chr21 251343 0.54% 1312
chr22 456124 0.90% 2322
chrX 604429 0.39% 3090
chrY 38681 0.07% 199
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 92725 11 1020 195.19 182
global segment-length histogram

Files

Filename Size md5
ENCFF777LKL.bed.gz 1.03 MB f98957682ddf09a57d719a99163303bd
ENCFF777LKL.tabix.bed.gz 960.62 KB 69833ce95dfd22d3a53baef910080fe5
ENCFF777LKL.tabix.bed.gz.tbi 369.52 KB fa0b5cb7741ffe0af4f376e5cbefac6c
genomic_resource.yaml 1.07 KB 6763ece59cd70a49d1f240019813f818
statistics/