Resource
| Id | DNase-seq/ENCSR895KTN |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR895KTN [biosample_summary="Homo sapiens HAP-1"] |
| Description |
status: released biological_replicates: Rep 2 summary: output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF162WTC|/files/ENCFF162WTC/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.40. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR895KTN | float |
DNase-seq_ENCSR895KTN |
DNase-seq ENCSR895KTN [biosample_summary="Homo sapiens HAP-1"]
|
 |
[0.0412, 65.8] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 25161552 | 0.78% | 137243 |
| chr1 | 2283256 | 0.92% | 12316 |
| chr2 | 1909472 | 0.79% | 10471 |
| chr3 | 1590281 | 0.80% | 8840 |
| chr4 | 1201726 | 0.63% | 6716 |
| chr5 | 1251821 | 0.69% | 6880 |
| chr6 | 1393084 | 0.82% | 7736 |
| chr7 | 1263198 | 0.79% | 6938 |
| chr8 | 1037686 | 0.71% | 5733 |
| chr9 | 1100790 | 0.80% | 6022 |
| chr10 | 1105595 | 0.83% | 6109 |
| chr11 | 1240777 | 0.92% | 6730 |
| chr12 | 1202536 | 0.90% | 6602 |
| chr13 | 611331 | 0.53% | 3417 |
| chr14 | 810936 | 0.76% | 4428 |
| chr15 | 1248234 | 1.22% | 6537 |
| chr16 | 830192 | 0.92% | 4458 |
| chr17 | 1102711 | 1.32% | 5856 |
| chr18 | 509165 | 0.63% | 2859 |
| chr19 | 1042049 | 1.78% | 5401 |
| chr20 | 655736 | 1.02% | 3543 |
| chr21 | 236570 | 0.51% | 1297 |
| chr22 | 533585 | 1.05% | 2861 |
| chrX | 999756 | 0.64% | 5485 |
| chrY | 1065 | <0.01% | 8 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 137243 | 2 | 940 | 183.34 | 180 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF061YKH.bed.gz | 1.49 MB | 637cb96686f328541de2f7a645c8126c |
| ENCFF061YKH.tabix.bed.gz | 1.37 MB | 5517a3b76d7eb2d98f1d746592215053 |
| ENCFF061YKH.tabix.bed.gz.tbi | 481.69 KB | a7357d606e21a00e9d7b099cc4d91274 |
| genomic_resource.yaml | 1.91 KB | be8cacadb6a84a47d94eb69ed9d61fff |
| statistics/ |