Resource

Id DNase-seq/ENCSR887VUCcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR887VUC [biosample_summary="Homo sapiens with Cognitive impairment, Alzheimer''s disease; posterior cingulate gyrus tissue male adult (73 years)"]
Description
Labels
  • accession: ENCSR887VUC
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002740/
  • biosample_summary: Homo sapiens with Cognitive impairment, Alzheimer's disease; posterior cingulate gyrus tissue male adult (73 years)
  • date_created: 2020-11-04T06:13:49.327086+00:00
  • date_released: 2021-01-12
  • doi: 10.17989/ENCSR887VUC
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (73 years) with Cognitive impairment, Alzheimer's disease
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR887VUC float

DNase-seq_ENCSR887VUC
DNase-seq ENCSR887VUC [biosample_summary="Homo sapiens with Cognitive impairment, Alzheimer''s disease; posterior cingulate gyrus tissue male adult (73 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR887VUC [0.0914, 24.4]
n
13,303,626
mean
2.73
sd
2.82

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 133036260.41% 71475
chr1 1291948 0.52% 6867
chr2 968002 0.40% 5284
chr3 767487 0.39% 4111
chr4 521381 0.27% 2764
chr5 641129 0.35% 3529
chr6 685210 0.40% 3656
chr7 656916 0.41% 3529
chr8 598943 0.41% 3246
chr9 564076 0.41% 3045
chr10 637332 0.48% 3468
chr11 763499 0.57% 4110
chr12 648995 0.49% 3437
chr13 263271 0.23% 1437
chr14 436916 0.41% 2351
chr15 423251 0.41% 2303
chr16 501672 0.56% 2691
chr17 685704 0.82% 3677
chr18 239068 0.30% 1303
chr19 704965 1.20% 3559
chr20 400365 0.62% 2193
chr21 175273 0.38% 948
chr22 379814 0.75% 2063
chrX 335456 0.21% 1826
chrY 12953 0.02% 78
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 71475 5 920 186.13 180
global segment-length histogram

Files

Filename Size md5
ENCFF174FXT.bed.gz 791.25 KB 8d00b1c41ba715789d97d3c86031a372
ENCFF174FXT.tabix.bed.gz 716.14 KB c9076af41b6860a0a87fc235641d3a1c
ENCFF174FXT.tabix.bed.gz.tbi 312.53 KB e560465f3b9245d74acdcd35ad64b71a
genomic_resource.yaml 1.5 KB f54a910da85ba42bfa5e49eb04b297da
statistics/