Resource

Id DNase-seq/ENCSR885AWFcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR885AWF [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL TNF-alpha for 48 hours"]
Description
Labels
  • accession: ENCSR885AWF
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000663/
  • biosample_summary: Homo sapiens stimulated activated CD4-positive, alpha-beta T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL TNF-alpha for 48 hours
  • date_created: 2020-04-18T22:21:51.069020+00:00
  • date_released: 2020-10-06
  • doi: 10.17989/ENCSR885AWF
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL TNF-alpha for 48 hours
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR885AWF float

DNase-seq_ENCSR885AWF
DNase-seq ENCSR885AWF [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL TNF-alpha for 48 hours"]
 HISTOGRAM FOR DNase-seq_ENCSR885AWF [0.274, 33.2]
n
9,371,589
mean
3.73
sd
3.32

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 93715890.29% 51866
chr1 941853 0.38% 5202
chr2 659429 0.27% 3687
chr3 536264 0.27% 2949
chr4 353317 0.19% 1946
chr5 426792 0.24% 2378
chr6 547109 0.32% 3023
chr7 442569 0.28% 2458
chr8 356272 0.25% 1967
chr9 398887 0.29% 2191
chr10 411044 0.31% 2312
chr11 464427 0.34% 2597
chr12 483424 0.36% 2669
chr13 197421 0.17% 1077
chr14 323075 0.30% 1793
chr15 311352 0.31% 1722
chr16 381760 0.42% 2098
chr17 525626 0.63% 2906
chr18 154422 0.19% 871
chr19 603078 1.03% 3209
chr20 248272 0.39% 1407
chr21 110277 0.24% 611
chr22 216450 0.43% 1213
chrX 278469 0.18% 1580
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 51866 2 763 180.69 180
global segment-length histogram

Files

Filename Size md5
ENCFF549QJQ.bed.gz 557.79 KB 28d5503973a0c007e0de30905d9e1415
ENCFF549QJQ.tabix.bed.gz 505.71 KB b84af8116f6ab73ef1f5f12828e7635f
ENCFF549QJQ.tabix.bed.gz.tbi 251.3 KB 0213fb562bed0750db369567bbb8b3c4
genomic_resource.yaml 2.43 KB ef6a3f8746b92fb3f8ab3e9ed2b31b9d
statistics/