Resource

Id DNase-seq/ENCSR881CRYcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR881CRY [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-15 for 48 hours"]
Description
Labels
  • accession: ENCSR881CRY
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000663/
  • biosample_summary: Homo sapiens stimulated activated CD4-positive, alpha-beta T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-15 for 48 hours
  • date_created: 2020-04-18T22:21:50.485596+00:00
  • date_released: 2020-10-06
  • doi: 10.17989/ENCSR881CRY
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-15 for 48 hours
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR881CRY float

DNase-seq_ENCSR881CRY
DNase-seq ENCSR881CRY [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 48 hours, 100 ng/mL Interleukin-15 for 48 hours"]
 HISTOGRAM FOR DNase-seq_ENCSR881CRY [0.262, 65.9]
n
9,390,517
mean
6.3
sd
6.41

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 93905170.29% 53373
chr1 947154 0.38% 5357
chr2 664120 0.27% 3796
chr3 525795 0.27% 2986
chr4 336074 0.18% 1925
chr5 430001 0.24% 2482
chr6 541524 0.32% 3071
chr7 427645 0.27% 2454
chr8 363206 0.25% 2093
chr9 388541 0.28% 2203
chr10 423994 0.32% 2433
chr11 470533 0.35% 2695
chr12 474407 0.36% 2688
chr13 187369 0.16% 1056
chr14 319507 0.30% 1828
chr15 320914 0.31% 1830
chr16 387360 0.43% 2170
chr17 533836 0.64% 2998
chr18 152179 0.19% 885
chr19 609889 1.04% 3317
chr20 268872 0.42% 1563
chr21 112343 0.24% 637
chr22 224536 0.44% 1277
chrX 280718 0.18% 1629
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 53373 1 679 175.94 180
global segment-length histogram

Files

Filename Size md5
ENCFF011YWR.bed.gz 583.58 KB 91a15ec97e4af532c6d72afbb7eef371
ENCFF011YWR.tabix.bed.gz 524.67 KB 55ca75c08e7f1addaa002b6472bbc7da
ENCFF011YWR.tabix.bed.gz.tbi 262.1 KB d1214f6a2b0d057cd3fe3e75398643ee
genomic_resource.yaml 2.45 KB 8dbb462d87b013f7de8765f6abf5a657
statistics/