Resource

Id DNase-seq/ENCSR874CAKcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR874CAK [biosample_summary="Homo sapiens large intestine tissue female embryo (108 days)"]
Description
Labels
  • accession: ENCSR874CAK
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0000059/
  • biosample_summary: Homo sapiens large intestine tissue female embryo (108 days)
  • date_created: 2015-09-16T21:42:20.178855+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR874CAK
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female embryo (108 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR874CAK float

DNase-seq_ENCSR874CAK
DNase-seq ENCSR874CAK [biosample_summary="Homo sapiens large intestine tissue female embryo (108 days)"]
 HISTOGRAM FOR DNase-seq_ENCSR874CAK [0.135, 11.5]
n
14,897,694
mean
1.63
sd
1.48

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 148976940.46% 74154
chr1 1432569 0.58% 7103
chr2 1175020 0.49% 5883
chr3 945952 0.48% 4712
chr4 765950 0.40% 3765
chr5 770754 0.42% 3873
chr6 930799 0.54% 4608
chr7 755591 0.47% 3836
chr8 640185 0.44% 3207
chr9 621764 0.45% 3084
chr10 692471 0.52% 3455
chr11 757558 0.56% 3804
chr12 753613 0.57% 3754
chr13 364073 0.32% 1818
chr14 479961 0.45% 2371
chr15 466939 0.46% 2378
chr16 507494 0.56% 2549
chr17 681477 0.82% 3335
chr18 332483 0.41% 1676
chr19 629752 1.07% 2913
chr20 372307 0.58% 1875
chr21 162782 0.35% 804
chr22 277500 0.55% 1432
chrX 380127 0.24% 1915
chrY 573 <0.01% 4
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 74154 1 880 200.9 200
global segment-length histogram

Files

Filename Size md5
ENCFF033GGY.bed.gz 780.29 KB a137219ff7156aaf283ba7c730dbdeaf
ENCFF033GGY.tabix.bed.gz 708.78 KB 6b90bf19b55a992e5b3094e47f21d34f
ENCFF033GGY.tabix.bed.gz.tbi 348.67 KB 805dc7d3cc049d1964effea2b7946b0b
genomic_resource.yaml 2.06 KB 4432eafc541b81b9f297e63487d8b65e
statistics/