Resource

Id DNase-seq/ENCSR872IXQcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR872IXQ [biosample_summary="Homo sapiens T-helper 2 cell male adult (30 years)"]
Description
Labels
  • accession: ENCSR872IXQ
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000546/
  • biosample_summary: Homo sapiens T-helper 2 cell male adult (30 years)
  • date_created: 2020-05-11T17:28:19.024532+00:00
  • date_released: 2020-09-28
  • doi: 10.17989/ENCSR872IXQ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (30 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR872IXQ float

DNase-seq_ENCSR872IXQ

DNase-seq ENCSR872IXQ [biosample_summary="Homo sapiens T-helper 2 cell male adult (30 years)"]
HISTOGRAM FOR DNase-seq_ENCSR872IXQ [0.164, 29.9]
n
5,872,104
mean
4.74
sd
4.05

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 58721040.18% 31013
chr1 615375 0.25% 3242
chr2 392309 0.16% 2066
chr3 316516 0.16% 1662
chr4 191297 0.10% 992
chr5 251005 0.14% 1320
chr6 318528 0.19% 1679
chr7 270892 0.17% 1427
chr8 219831 0.15% 1190
chr9 238964 0.17% 1279
chr10 254168 0.19% 1355
chr11 319842 0.24% 1699
chr12 299483 0.22% 1568
chr13 112152 0.10% 568
chr14 210696 0.20% 1123
chr15 183476 0.18% 979
chr16 245945 0.27% 1292
chr17 364051 0.44% 1921
chr18 80563 0.10% 433
chr19 440208 0.75% 2273
chr20 161307 0.25% 902
chr21 62517 0.13% 343
chr22 152189 0.30% 811
chrX 164953 0.11% 861
chrY 5837 0.01% 28
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 31013 9 720 189.34 180
global segment-length histogram

Files

Filename Size md5
ENCFF583LPJ.bed.gz 344.89 KB af936588342611c2a25fea24e08874ee
ENCFF583LPJ.tabix.bed.gz 313.69 KB b3100302c4eb6e1323ab226c0db75aaa
ENCFF583LPJ.tabix.bed.gz.tbi 159.74 KB cc5ded0756a5fbaa4a7a02a950808023
genomic_resource.yaml 2.02 KB 7550dffd3063ce527e6249c6efa87eb6
statistics/