Resource

Id DNase-seq/ENCSR872DUYcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR872DUY [biosample_summary="Homo sapiens ovary tissue female adult (41 years)"]
Description
Labels
  • accession: ENCSR872DUY
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0000992/
  • biosample_summary: Homo sapiens ovary tissue female adult (41 years)
  • date_created: 2019-11-01T20:44:44.981856+00:00
  • date_released: 2020-09-28
  • doi: 10.17989/ENCSR872DUY
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (41 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR872DUY float

DNase-seq_ENCSR872DUY
DNase-seq ENCSR872DUY [biosample_summary="Homo sapiens ovary tissue female adult (41 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR872DUY [0.0521, 56.2]
n
20,151,302
mean
2.82
sd
4.44

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 201513020.63% 100623
chr1 1849760 0.74% 9191
chr2 1481199 0.61% 7452
chr3 1026908 0.52% 5252
chr4 739006 0.39% 3691
chr5 851543 0.47% 4349
chr6 860836 0.50% 4415
chr7 978932 0.61% 4890
chr8 839305 0.58% 4231
chr9 1016425 0.73% 4958
chr10 995876 0.74% 5044
chr11 1232499 0.91% 6074
chr12 884312 0.66% 4469
chr13 307236 0.27% 1553
chr14 714282 0.67% 3576
chr15 624375 0.61% 3212
chr16 934353 1.03% 4620
chr17 1153339 1.39% 5661
chr18 329421 0.41% 1711
chr19 1188283 2.03% 5705
chr20 606916 0.94% 3070
chr21 378582 0.81% 1777
chr22 659268 1.30% 3224
chrX 497962 0.32% 2492
chrY 684 <0.01% 6
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 100623 1 1000 200.27 180
global segment-length histogram

Files

Filename Size md5
ENCFF816OUE.bed.gz 1.05 MB 71f3a37cb160280c7ec347cc4aaeaff4
ENCFF816OUE.tabix.bed.gz 1009.35 KB 45434d7da231b0fda164413c1282f381
ENCFF816OUE.tabix.bed.gz.tbi 286.33 KB 2ee420e31d789c4eb4a66410e7f43960
genomic_resource.yaml 1.21 KB 7f587563694416dc17fcd47e2931b05d
statistics/