Resource

Id DNase-seq/ENCSR869JYOcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR869JYO [biosample_summary="Homo sapiens T-helper 2 cell male adult (42 years)"]
Description
Labels
  • accession: ENCSR869JYO
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000546/
  • biosample_summary: Homo sapiens T-helper 2 cell male adult (42 years)
  • date_created: 2020-04-16T03:32:08.060033+00:00
  • date_released: 2020-09-28
  • doi: 10.17989/ENCSR869JYO
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (42 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR869JYO float

DNase-seq_ENCSR869JYO

DNase-seq ENCSR869JYO [biosample_summary="Homo sapiens T-helper 2 cell male adult (42 years)"]
HISTOGRAM FOR DNase-seq_ENCSR869JYO [0.174, 45.6]
n
7,779,439
mean
5.23
sd
5.22

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 77794390.24% 41457
chr1 808160 0.32% 4288
chr2 530571 0.22% 2838
chr3 412696 0.21% 2220
chr4 257696 0.14% 1364
chr5 345330 0.19% 1847
chr6 448240 0.26% 2376
chr7 342920 0.22% 1829
chr8 278940 0.19% 1520
chr9 311987 0.23% 1660
chr10 344883 0.26% 1851
chr11 404281 0.30% 2155
chr12 406820 0.31% 2153
chr13 150195 0.13% 790
chr14 270598 0.25% 1466
chr15 251122 0.25% 1354
chr16 330233 0.37% 1750
chr17 481749 0.58% 2564
chr18 114439 0.14% 611
chr19 548557 0.94% 2823
chr20 221201 0.34% 1205
chr21 86753 0.19% 468
chr22 195949 0.39% 1061
chrX 227478 0.15% 1218
chrY 8641 0.02% 46
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 41457 5 680 187.65 180
global segment-length histogram

Files

Filename Size md5
ENCFF588UYI.bed.gz 462.12 KB e2229b3aadbc23683a4ef6c6ea5a6d63
ENCFF588UYI.tabix.bed.gz 420.45 KB c28857ea937c54ca3d792d5ca9e63a7f
ENCFF588UYI.tabix.bed.gz.tbi 206.61 KB d491c8e10d5fe63a3b1fb72b0d0cb5d9
genomic_resource.yaml 1.21 KB 2accca3ce05cd2c8578abcc5f83f391c
statistics/