Resource

Id DNase-seq/ENCSR867XFAcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR867XFA [biosample_summary="Homo sapiens left colon tissue female adult (59 years)"]
Description
Labels
  • accession: ENCSR867XFA
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0008971/
  • biosample_summary: Homo sapiens left colon tissue female adult (59 years)
  • date_created: 2019-02-01T18:42:55.671242+00:00
  • date_released: 2020-09-28
  • doi: 10.17989/ENCSR867XFA
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (59 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR867XFA float

DNase-seq_ENCSR867XFA

DNase-seq ENCSR867XFA [biosample_summary="Homo sapiens left colon tissue female adult (59 years)"]
HISTOGRAM FOR DNase-seq_ENCSR867XFA [0.0544, 33.3]
n
20,884,681
mean
2.02
sd
2.86

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 208846810.65% 110995
chr1 2026704 0.81% 10742
chr2 1690410 0.70% 8977
chr3 1081078 0.55% 5906
chr4 767747 0.40% 4154
chr5 918563 0.51% 4938
chr6 917154 0.54% 5036
chr7 1031739 0.65% 5481
chr8 853888 0.59% 4580
chr9 1034651 0.75% 5434
chr10 1173621 0.88% 6235
chr11 1281208 0.95% 6679
chr12 873495 0.66% 4716
chr13 357593 0.31% 1942
chr14 743892 0.69% 3938
chr15 637381 0.62% 3466
chr16 851160 0.94% 4530
chr17 1198211 1.44% 6247
chr18 371515 0.46% 2012
chr19 1020839 1.74% 5154
chr20 657445 1.02% 3489
chr21 351871 0.75% 1805
chr22 637727 1.25% 3357
chrX 406453 0.26% 2174
chrY 336 <0.01% 3
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 110995 1 1340 188.16 180
global segment-length histogram

Files

Filename Size md5
ENCFF341AEQ.bed.gz 1.16 MB 997f828fef49e07dc238a0db68b0a03d
ENCFF341AEQ.tabix.bed.gz 1.06 MB 21c1a6fe70e34b70c3cdefb936de1f46
ENCFF341AEQ.tabix.bed.gz.tbi 325.76 KB 81f3921c2573472cc7ba2ecfebdd8ffa
genomic_resource.yaml 1.22 KB 98cafdb4984aa32d53076ed2df45c303
statistics/