Resource

Id DNase-seq/ENCSR866ODXcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR866ODX [biosample_summary="Homo sapiens testis tissue male adult (37 years)"]
Description
Labels
  • accession: ENCSR866ODX
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0000473/
  • biosample_summary: Homo sapiens testis tissue male adult (37 years)
  • date_created: 2019-07-29T20:41:33.073405+00:00
  • date_released: 2019-11-08
  • doi: 10.17989/ENCSR866ODX
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (37 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR866ODX float

DNase-seq_ENCSR866ODX

DNase-seq ENCSR866ODX [biosample_summary="Homo sapiens testis tissue male adult (37 years)"]
HISTOGRAM FOR DNase-seq_ENCSR866ODX [7, 1.73e+04]
n
14,091,580
mean
101
sd
136

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 140915800.44% 93811
chr1 1320968 0.53% 8797
chr2 1067203 0.44% 7105
chr3 888489 0.45% 5919
chr4 649309 0.34% 4321
chr5 724566 0.40% 4823
chr6 811737 0.48% 5405
chr7 713874 0.45% 4750
chr8 631569 0.44% 4201
chr9 620725 0.45% 4134
chr10 652453 0.49% 4341
chr11 718831 0.53% 4790
chr12 680276 0.51% 4530
chr13 344175 0.30% 2292
chr14 453575 0.42% 3018
chr15 467728 0.46% 3111
chr16 501424 0.56% 3339
chr17 638204 0.77% 4244
chr18 297811 0.37% 1981
chr19 608391 1.04% 4054
chr20 408300 0.63% 2715
chr21 162007 0.35% 1080
chr22 287570 0.57% 1915
chrX 419595 0.27% 2794
chrY 22800 0.04% 152
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 93811 13 450 150.21 150
global segment-length histogram

Files

Filename Size md5
ENCFF323BCL.bed.gz 930.76 KB 1c2f59da14a34e93720ec101e6f7f1c9
ENCFF323BCL.tabix.bed.gz 795.79 KB 3b151977d58a54c285100abc4e50c5ee
ENCFF323BCL.tabix.bed.gz.tbi 436.98 KB 344de0373e2b2a916d90953291f69998
genomic_resource.yaml 1.37 KB b151c071f5e08b79f3e0976b5acd4aba
statistics/