Resource

Id DNase-seq/ENCSR863LZTcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR863LZT [biosample_summary="Homo sapiens T-cell male adult (39 years)"]
Description
Labels
  • accession: ENCSR863LZT
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000084/
  • biosample_summary: Homo sapiens T-cell male adult (39 years)
  • date_created: 2020-04-12T18:59:14.024049+00:00
  • date_released: 2020-09-25
  • doi: 10.17989/ENCSR863LZT
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (39 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR863LZT float

DNase-seq_ENCSR863LZT
DNase-seq ENCSR863LZT [biosample_summary="Homo sapiens T-cell male adult (39 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR863LZT [0.289, 99.2]
n
7,289,080
mean
8.61
sd
11.5

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 72890800.23% 40223
chr1 741357 0.30% 4122
chr2 505772 0.21% 2813
chr3 382697 0.19% 2130
chr4 244849 0.13% 1363
chr5 320612 0.18% 1774
chr6 419391 0.25% 2325
chr7 327347 0.21% 1802
chr8 260550 0.18% 1450
chr9 289260 0.21% 1603
chr10 320917 0.24% 1776
chr11 379261 0.28% 2082
chr12 364405 0.27% 2005
chr13 141537 0.12% 775
chr14 257617 0.24% 1423
chr15 237214 0.23% 1320
chr16 314060 0.35% 1709
chr17 462178 0.56% 2547
chr18 110383 0.14% 615
chr19 508890 0.87% 2708
chr20 211802 0.33% 1185
chr21 88260 0.19% 486
chr22 185849 0.37% 1035
chrX 206017 0.13% 1129
chrY 8855 0.02% 46
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 40223 11 660 181.22 180
global segment-length histogram

Files

Filename Size md5
ENCFF616TIS.bed.gz 450.25 KB 17af65ac8c1c92643ee06da2a771b651
ENCFF616TIS.tabix.bed.gz 406.69 KB 6c4f3420c8d7e3970fd7c1600e1ad299
ENCFF616TIS.tabix.bed.gz.tbi 206.61 KB 333fafe19477053bc25160428f1002e4
genomic_resource.yaml 1.79 KB 5609665b190433db5ce186b183462d07
statistics/