Resource

Id DNase-seq/ENCSR861NUHcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR861NUH [biosample_summary="Homo sapiens muscle of leg tissue male embryo (104 days)"]
Description
Labels
  • accession: ENCSR861NUH
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001383/
  • biosample_summary: Homo sapiens muscle of leg tissue male embryo (104 days)
  • date_created: 2015-09-16T21:42:36.593780+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR861NUH
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male embryo (104 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR861NUH float

DNase-seq_ENCSR861NUH
DNase-seq ENCSR861NUH [biosample_summary="Homo sapiens muscle of leg tissue male embryo (104 days)"]
 HISTOGRAM FOR DNase-seq_ENCSR861NUH [0.227, 28.5]
n
10,805,253
mean
2.95
sd
2.84

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 108052530.34% 60441
chr1 977688 0.39% 5468
chr2 886204 0.37% 4950
chr3 706059 0.36% 3973
chr4 569669 0.30% 3221
chr5 621043 0.34% 3503
chr6 670215 0.39% 3738
chr7 548039 0.34% 3117
chr8 525415 0.36% 2949
chr9 444434 0.32% 2486
chr10 530314 0.40% 2981
chr11 551701 0.41% 3121
chr12 536588 0.40% 2991
chr13 312942 0.27% 1736
chr14 353693 0.33% 1954
chr15 338487 0.33% 1904
chr16 329618 0.36% 1839
chr17 423641 0.51% 2359
chr18 234566 0.29% 1341
chr19 392053 0.67% 2055
chr20 264931 0.41% 1477
chr21 127546 0.27% 719
chr22 166945 0.33% 922
chrX 285534 0.18% 1594
chrY 7928 0.01% 43
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 60441 1 780 178.77 180
global segment-length histogram

Files

Filename Size md5
ENCFF632GZT.bed.gz 644.26 KB 856e999d06c4755978c9b92c2561aa4e
ENCFF632GZT.tabix.bed.gz 572.17 KB 8df77559d6e74c45489e90ac34dd8b99
ENCFF632GZT.tabix.bed.gz.tbi 336.4 KB 386d00ab6a1eaee25b76152534fba3c2
genomic_resource.yaml 1.84 KB 7f97f10eaa24e3723961112606d07666
statistics/