Resource

Id DNase-seq/ENCSR860UTHcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR860UTH [biosample_summary="Homo sapiens head of caudate nucleus tissue male adult (86 years)"]
Description
Labels
  • accession: ENCSR860UTH
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002626/
  • biosample_summary: Homo sapiens head of caudate nucleus tissue male adult (86 years)
  • date_created: 2020-12-15T22:21:54.318608+00:00
  • date_released: 2021-01-11
  • doi: 10.17989/ENCSR860UTH
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (86 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR860UTH float

DNase-seq_ENCSR860UTH
DNase-seq ENCSR860UTH [biosample_summary="Homo sapiens head of caudate nucleus tissue male adult (86 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR860UTH [0.0214, 23.2]
n
39,158,807
mean
1.14
sd
1.89

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 391588071.22% 212325
chr1 3425322 1.38% 18390
chr2 3362438 1.39% 18195
chr3 2165152 1.09% 11843
chr4 1328809 0.70% 7377
chr5 2087104 1.15% 11302
chr6 2038379 1.19% 11131
chr7 1952382 1.23% 10705
chr8 1809153 1.25% 9941
chr9 1643935 1.19% 8922
chr10 2485744 1.86% 13489
chr11 2042327 1.51% 10985
chr12 1607493 1.21% 8838
chr13 872912 0.76% 4822
chr14 1245007 1.16% 6760
chr15 1515152 1.49% 8206
chr16 1519395 1.68% 8277
chr17 1805446 2.17% 9590
chr18 1021395 1.27% 5603
chr19 1502351 2.56% 7759
chr20 1258578 1.95% 6862
chr21 507773 1.09% 2773
chr22 1067572 2.10% 5675
chrX 865054 0.55% 4707
chrY 29934 0.05% 173
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 212325 1 1020 184.43 180
global segment-length histogram

Files

Filename Size md5
ENCFF142UYG.bed.gz 2.21 MB 2be3e1b771b45329aa1cf4f99fd1bdb1
ENCFF142UYG.tabix.bed.gz 2.03 MB decbcbb40e98a3608d64a4ea87e92654
ENCFF142UYG.tabix.bed.gz.tbi 506.64 KB d06af232e1204d2426edf5a6c87d253f
genomic_resource.yaml 1.25 KB 83af6b0669853779d2eb8fcc2bfece28
statistics/