Resource

Id DNase-seq/ENCSR860IDOcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR860IDO [biosample_summary="Homo sapiens activated CD8-positive, alpha-beta memory T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours"]
Description
Labels
  • accession: ENCSR860IDO
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_NTR_0000504/
  • biosample_summary: Homo sapiens activated CD8-positive, alpha-beta memory T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours
  • date_created: 2020-04-19T18:36:50.201878+00:00
  • date_released: 2020-09-28
  • doi: 10.17989/ENCSR860IDO
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR860IDO float

DNase-seq_ENCSR860IDO
DNase-seq ENCSR860IDO [biosample_summary="Homo sapiens activated CD8-positive, alpha-beta memory T cell female adult (33 years) treated with anti-CD3 and anti-CD28 coated beads for 4 hours"]
 HISTOGRAM FOR DNase-seq_ENCSR860IDO [0.418, 42.9]
n
5,923,037
mean
6.46
sd
5.52

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 59230370.18% 31949
chr1 615943 0.25% 3317
chr2 402773 0.17% 2194
chr3 313794 0.16% 1708
chr4 200394 0.11% 1070
chr5 253768 0.14% 1387
chr6 343604 0.20% 1857
chr7 272546 0.17% 1461
chr8 207616 0.14% 1132
chr9 241020 0.17% 1297
chr10 251859 0.19% 1378
chr11 304772 0.23% 1638
chr12 311588 0.23% 1655
chr13 113606 0.10% 613
chr14 203254 0.19% 1097
chr15 190108 0.19% 1052
chr16 259074 0.29% 1387
chr17 378100 0.45% 2045
chr18 85620 0.11% 466
chr19 432161 0.74% 2254
chr20 168579 0.26% 923
chr21 67070 0.14% 374
chr22 145293 0.29% 787
chrX 160495 0.10% 857
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 31949 11 820 185.39 180
global segment-length histogram

Files

Filename Size md5
ENCFF568NDJ.bed.gz 348.87 KB 6f4916fc01292291844681ba01f8581f
ENCFF568NDJ.tabix.bed.gz 315.02 KB 0a03e99585f667ab9c3071586e507859
ENCFF568NDJ.tabix.bed.gz.tbi 178.16 KB 02132acdbc43352ab996dfeeac13da2b
genomic_resource.yaml 2.25 KB 61a99d4aeea16250e9cc3f117abf7f7f
statistics/