Resource

Id DNase-seq/ENCSR859LTLcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR859LTL [biosample_summary="Homo sapiens breast epithelium tissue female adult (51 years)"]
Description
Labels
  • accession: ENCSR859LTL
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0008367/
  • biosample_summary: Homo sapiens breast epithelium tissue female adult (51 years)
  • date_created: 2019-08-18T16:57:12.367475+00:00
  • date_released: 2019-11-08
  • doi: 10.17989/ENCSR859LTL
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (51 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR859LTL float

DNase-seq_ENCSR859LTL

DNase-seq ENCSR859LTL [biosample_summary="Homo sapiens breast epithelium tissue female adult (51 years)"]
HISTOGRAM FOR DNase-seq_ENCSR859LTL [7, 1.77e+04]
n
12,672,273
mean
149
sd
203

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 126722730.39% 84356
chr1 1293798 0.52% 8606
chr2 974379 0.40% 6480
chr3 770964 0.39% 5134
chr4 507988 0.27% 3382
chr5 632332 0.35% 4203
chr6 714664 0.42% 4760
chr7 589823 0.37% 3926
chr8 542463 0.37% 3612
chr9 534407 0.39% 3558
chr10 601246 0.45% 4010
chr11 673885 0.50% 4487
chr12 607980 0.46% 4050
chr13 268581 0.23% 1792
chr14 407517 0.38% 2713
chr15 446286 0.44% 2969
chr16 469773 0.52% 3126
chr17 655492 0.79% 4364
chr18 256325 0.32% 1706
chr19 579913 0.99% 3860
chr20 367353 0.57% 2447
chr21 161991 0.35% 1079
chr22 297998 0.59% 1982
chrX 315465 0.20% 2099
chrY 1650 <0.01% 11
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 84356 1 450 150.22 150
global segment-length histogram

Files

Filename Size md5
ENCFF889FYM.bed.gz 844.02 KB 07682b9cd41cf6f57dc6792c89b869c9
ENCFF889FYM.tabix.bed.gz 720.84 KB 5cb519f4090c4a8c48134a3808cd3ce2
ENCFF889FYM.tabix.bed.gz.tbi 356.93 KB 537250672db64e858246968de4f9d81b
genomic_resource.yaml 2.22 KB a16e827fe262d4aded9ecf270241cd74
statistics/